Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322B09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476...    30   1.3  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    29   3.0  
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446...    28   5.2  
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998     28   5.2  
04_03_0200 - 12570414-12570712,12572704-12573007                       27   6.9  
03_05_0862 + 28353235-28354431                                         27   6.9  
11_06_0164 + 20833525-20834685,20835053-20835124,20836302-208363...    27   9.1  
05_02_0085 - 6465126-6466049                                           27   9.1  

>08_02_0733 + 20546072-20546325,20546924-20547017,20547441-20547624,
            20547722-20547831,20548328-20548423,20548525-20548679,
            20548743-20548986,20549159-20549314,20549600-20549829,
            20552213-20552316,20552420-20552505,20552776-20553066,
            20553383-20553475,20553640-20553735,20553838-20553939,
            20554196-20554266,20554784-20555035,20555786-20556529,
            20557038-20557119,20557192-20557347,20557446-20557655,
            20558282-20558665
          Length = 1397

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 387  LVSVFTNERVNDSFLVPNSARGPPNLSILVSGGKETNQ 274
            L SV T +R+ DS+  P+S  GP   S  VS  K T +
Sbjct: 1299 LCSVVTTQRLKDSYKAPSSEHGPEGPSQDVSQQKGTRK 1336


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 269 SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 174
           S V  +E+ Y+P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


>11_04_0301 +
           16142236-16142945,16143748-16144247,16144557-16144649,
           16144879-16145005,16145265-16145468,16145587-16145692
          Length = 579

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 185 PEHHI---SRYRLKQRDSVLGYIPVRSPLLRKSWLVSFPPLTNM-LKFGGPRAEFGTRK 349
           PEHH     R     +  V+G+ P   P+L+++ ++    LTN+ L    P    G R+
Sbjct: 22  PEHHAVYSGRIVTLNKSGVVGHRPAPPPVLQEAQILDVDDLTNLALLPPSPEPSLGPRR 80


>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
          Length = 473

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 75  SLSPRPSVATGLAPSTGKRPRSRRTWTGVVA 167
           +L  RPSV  G A +T + P SRR   GV A
Sbjct: 97  TLYTRPSVLAGAASATTRSPSSRRGGGGVRA 127


>04_03_0200 - 12570414-12570712,12572704-12573007
          Length = 200

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 69  GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 182
           G   + RPS   G+A S+G + RS + W     T K N
Sbjct: 109 GVEQAARPSCNAGIASSSGGKKRS-KAWEDFDITEKEN 145


>03_05_0862 + 28353235-28354431
          Length = 398

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 175 FLVATTPVQVRLERGRFPVEGARPVATEGRGE 80
           FLV + P      RG   VE  RPVA  G GE
Sbjct: 262 FLVESPPGSAGGRRGLMQVELLRPVAASGGGE 293


>11_06_0164 +
           20833525-20834685,20835053-20835124,20836302-20836328,
           20836419-20836496,20837005-20837046
          Length = 459

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 157 PVQVRLERGRFPVEGARPVATEGRGERDA 71
           P +V + + R P EGA  VA  G G+  A
Sbjct: 19  PARVAMHKRRLPAEGALSVARVGAGDEAA 47


>05_02_0085 - 6465126-6466049
          Length = 307

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +2

Query: 32  PLRAALSSNPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYR 211
           P +   S +P+  S      LRR  PG +    A F T+L   RR          +    
Sbjct: 22  PTKPTPSPSPSPASARRRRVLRRGSPGRIKSLAATFDTSLRGCRRRLLKLFARLAVLGSP 81

Query: 212 LKQRDSVLGYIPVRSP 259
            K+R +  G+  +RSP
Sbjct: 82  TKRRAAAAGFRRLRSP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,742,706
Number of Sequences: 37544
Number of extensions: 284805
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)