Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322B07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 28 0.73
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 28 0.97
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 27 1.7
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 3.0
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 26 3.0
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 25 5.2
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 6.8
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 9.0
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 9.0
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 25 9.0
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 104 TPPRETIQKQIQQD-WANREYIEVITGS 184
TP RE ++Q +D W + EY EV+ GS
Sbjct: 121 TPKREIARRQRDEDEWESDEYEEVVDGS 148
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.9 bits (59), Expect = 0.97
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 71 RISSN*LYIMSTPPRETIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRLATL 250
+++SN L+ + T R I+ Q + + + IK + + ++S D LA +
Sbjct: 392 KLNSNLLFKLQTLNRN-IKVTSQSKDSLTSIVGDLESKIKSLHESVSSLDTERADLLAKI 450
Query: 251 NEKLTSLE 274
NEK+ SLE
Sbjct: 451 NEKIESLE 458
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 27.1 bits (57), Expect = 1.7
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 71 RISSN*LYIMSTPPRETIQKQIQQDWA 151
++ +N +YI+ T P +K ++++WA
Sbjct: 157 KVLANPMYILGTAPNTQTKKNLEENWA 183
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.2 bits (55), Expect = 3.0
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Frame = +3
Query: 312 VKP*HEVIFNKFHIIISVRYKFNNVA-------ITEQSLLSSITK--LQ*SLDIICTY-- 458
+ P H VIF I+ V K NN+ + EQ++ S + + Q S+ II Y
Sbjct: 1188 INPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKS 1247
Query: 459 -IELL*SNVKKYVIIK 503
+ELL N+K + I+
Sbjct: 1248 QVELLSKNLKSFTEIE 1263
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -3
Query: 279 FLSNDVNFSFKVARRDLQDMSNELRKSVIFFMLP 178
F+S +VN + + + M+N ++K + F++P
Sbjct: 132 FMSENVNLQYALLNSIIDKMNNNIKKPNLEFLMP 165
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 270 NDVNFSFKVARRDLQDMSNELRKSVIFFMLPVITSMYSLLAQSCWIC 130
N F +V RDL + N+L +S F LP+ + L C C
Sbjct: 15 NHALFRTRVYGRDLDQIHNDLTESEKFDKLPIDPDLPGLGQHYCIEC 61
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 155 REYIEVITGSIKKITDFLNSFDMSCR-SRLATLNEKLTSLERKIDYL 292
RE E+I +++K+ +LNSF + S ++ + E+K +L
Sbjct: 590 RERQEIIIQNVEKLKSYLNSFKVQAECSEISKILSFSQETEKKYKFL 636
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 386 YIIELISNAYNYMEFIEDYFMLRFH 312
Y I L+ ++ +EFI D+ RFH
Sbjct: 39 YWISLLGDSAETIEFISDFNQKRFH 63
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 74 ISSN*LYIMSTPPRETIQKQIQQDWANREYIEVITGSIKKITDF-LNSFDMSCRSRLATL 250
+S N LY++ P T+ N Y +++TG K LNS RL
Sbjct: 170 LSKNPLYLVGVSPSTTLSAAYLLSELNLLYCQILTGVTAKAMQLTLNSRPNFDLRRLIGS 229
Query: 251 NEK 259
NE+
Sbjct: 230 NEQ 232
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 17 DNSFKILKYIVNLLYKLFRISSN*LYIMSTPPRETIQKQIQ----QDWANRE---YIEVI 175
D K+ + ++ +L L I +ST E + K +Q + WA+ + Y++ I
Sbjct: 260 DTKTKVYRLVLAILVNL--IDKAPKDTISTMLLEHVDKAVQLLQKRKWADEDITNYLDFI 317
Query: 176 TGSIKKITDFLNSFDM 223
T ++ + + L++FDM
Sbjct: 318 TSTLDESSKHLSTFDM 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,458
Number of Sequences: 5004
Number of extensions: 38085
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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