Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322B07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1322 - 35698314-35698322,35698537-35698619,35699685-35699823     60   8e-10
04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302     34   0.080
05_07_0099 - 27675917-27676032,27676137-27676260                       30   1.3  
08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936...    29   1.7  
04_03_0893 - 20602008-20602361,20602455-20602604,20602723-206028...    28   5.2  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    27   6.9  
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836...    27   6.9  

>02_05_1322 - 35698314-35698322,35698537-35698619,35699685-35699823
          Length = 76

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 26/54 (48%), Positives = 41/54 (75%)
 Frame = +2

Query: 134 IQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRLATLNEKLTSLERKIDYLE 295
           +Q DW NRE+I  I+ +++++ DFL  F+ + +S+LA+LNEKL  LERK++ LE
Sbjct: 19  VQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLDILERKLEVLE 72


>04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302
          Length = 164

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 185 IKKITDFLNSFDMSCRSRLATLNEKLTSLERKIDYLEA 298
           I    +FLNSF   C  +L+ L+ K+  L+  ++ LEA
Sbjct: 87  IANTVEFLNSFAAQCNDKLSLLHRKIVKLDSSLNLLEA 124


>05_07_0099 - 27675917-27676032,27676137-27676260
          Length = 79

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 194 ITDFLNSFDMSCRSRLATLNEKLTSLERKIDYLEACVTK 310
           I+   +  D + R RL  +NE+L  LE +++ LEA V K
Sbjct: 34  ISQQASQLDEAARKRLQRMNERLKLLEMQMETLEAGVAK 72


>08_02_0274 -
           15192670-15192983,15193110-15193200,15193295-15193603,
           15193859-15193944,15196034-15196088,15196689-15196757,
           15197027-15197074,15198090-15198203,15198464-15198526,
           15199236-15199427,15199519-15199643,15199723-15199779,
           15200209-15200332,15200478-15200543,15200656-15200738,
           15200916-15201036,15201663-15201773,15201841-15201936,
           15202032-15202107,15202878-15203016,15203283-15203346,
           15203454-15203527,15203845-15203923,15204473-15204547
          Length = 876

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 103 DATKRNNTKTNPAGLGQQRIHRSDHRQHKKNY 198
           + TKRN+ K     +G Q ++R+   Q  KNY
Sbjct: 662 EKTKRNHNKKGRTNIGWQNLYRNFREQSGKNY 693


>04_03_0893 -
           20602008-20602361,20602455-20602604,20602723-20602835,
           20603105-20603377,20603746-20603886,20604638-20604974
          Length = 455

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 146 WANREYIEVITGSIKKITDFLNSFDMSCRSRLAT 247
           WA  +  ++  G++ K+ DFL   +  C    AT
Sbjct: 229 WAGEDLHKLAAGNLDKLADFLEGMETECFGESAT 262


>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +2

Query: 68   FRISSN*LYIMSTPPRETIQKQIQQDWANREYIEVITGSIKKITDFLNSFDMSCRSRLAT 247
            FR +S  ++ +  PP +       Q+W  +E  EV+  +    T+ LN+       R  T
Sbjct: 1059 FRYASIKVHSVYLPPPKLDFTSQHQEWVEQEANEVVDSAELLFTEVLNALHQISEGRPIT 1118

Query: 248  ----LNEKLTSLERKIDYLE 295
                 N K+  L R I  LE
Sbjct: 1119 GSFDGNMKILELRRNIMELE 1138


>01_01_1060 -
           8363272-8365912,8366375-8366443,8366479-8366843,
           8367403-8367550,8367630-8367873,8368105-8368407,
           8368639-8368851,8368927-8369002,8369533-8369561,
           8369610-8369984,8371784-8371927,8374053-8374086
          Length = 1546

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 237 RDLQDMSNELRKSVIFFMLPVITSMYSLLAQSCWICFCIVSLG 109
           R   D SNE   S+I  +   I ++ ++L  + +ICFC +  G
Sbjct: 239 RHSADTSNEKHMSLITIICIFIGALIAVLVIAMFICFCKLRKG 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,210,870
Number of Sequences: 37544
Number of extensions: 189087
Number of successful extensions: 494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)