Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322B05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 45 8e-06
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 3.9
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 25 5.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 5.2
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 6.8
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ... 25 6.8
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 6.8
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 25 6.8
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 9.0
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 44.8 bits (101), Expect = 8e-06
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Frame = +1
Query: 1 ADNRCEDCHCSERPSNN-SKPATDNNDPTAAPQGSNR*STSSATDSCDPEATSHSYHHVD 177
+++ ED S S++ S+ +++++D +++ S S+S +DS ++S S
Sbjct: 119 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSES--ESS 176
Query: 178 QQPNDAGHPATDSGEPAIAPRGATAYIGVEQPARADECTAEGERSQSRATSEESSREPTD 357
+ ND+ ++DS + + ++ + + E ++EG S S ++S ES D
Sbjct: 177 SEDNDSSSSSSDSESESSSEDSDSSSSSSDSES---ESSSEGSDSSSSSSSSESESSSED 233
Query: 358 GDSGIRCAD*HQEYSHSERRESPGTSNEAGDHPATGD 468
DS +D E S SE +S +S+++ ++ D
Sbjct: 234 NDSSSSSSDSESE-SSSEDSDSSSSSSDSESESSSKD 269
Score = 37.9 bits (84), Expect = 0.001
Identities = 31/144 (21%), Positives = 60/144 (41%)
Frame = +1
Query: 34 ERPSNNSKPATDNNDPTAAPQGSNR*STSSATDSCDPEATSHSYHHVDQQPNDAGHPATD 213
E+ +++S+ + P S+ S S + S D +S S + ND+ ++D
Sbjct: 77 EKSNDDSQKISKKGAPPEKAHSSSEASGSGS--SSDESDSSSSESESSSEDNDSSSSSSD 134
Query: 214 SGEPAIAPRGATAYIGVEQPARADECTAEGERSQSRATSEESSREPTDGDSGIRCAD*HQ 393
S + + ++ + + E ++EG S S ++S ES D DS +D
Sbjct: 135 SESESSSEDSDSSSSSSDSES---ESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSES 191
Query: 394 EYSHSERRESPGTSNEAGDHPATG 465
E S + S +S+ + + G
Sbjct: 192 ESSSEDSDSSSSSSDSESESSSEG 215
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = -1
Query: 380 AQRMPESPS-VGSRLDSSEVARLCERSPS-----AVHSSARAGCSTPI*AVAPLGAIAGS 219
++R P S + +G+R E+A +P+ + A G +TP+ AV + A+A S
Sbjct: 243 SRRRPSSIAPIGTRPSRKEIAFSNSSTPTDQTLRPPNPPAANGNATPVTAVNNVSAVADS 302
Query: 218 PESVAGCPAS 189
P+S +S
Sbjct: 303 PQSTGSSVSS 312
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 3.9
Identities = 23/96 (23%), Positives = 38/96 (39%)
Frame = +1
Query: 49 NSKPATDNNDPTAAPQGSNR*STSSATDSCDPEATSHSYHHVDQQPNDAGHPATDSGEPA 228
N+ ATD + + S+ S S TDS D S S ++ +D+ H ++ +
Sbjct: 167 NNDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIES--SDSDHDDGENSDSK 224
Query: 229 IAPRGATAYIGVEQPARADECTAEGERSQSRATSEE 336
+ + + Q + DE AE S S E
Sbjct: 225 L-DNLRNYIVSLNQKRKKDEADAESVLSSDDNDSIE 259
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = -3
Query: 246 CPPWSNCWFP*ISCW-------VPCIIWLLVDVVIRVGGCFW 142
CP W W ++C+ +P +WLL D + G +W
Sbjct: 186 CPHWGKFWLATLNCYDWDGVNPIPPELWLLPDWIPFHPGKWW 227
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 112 STSSATDSCDPEATSHSYHHVDQQPNDAGHPATDSGEPAIAPR 240
ST +TD +PE TS + P+ PA S +P I P+
Sbjct: 354 STIRSTDEREPERTSEDPPQLPPSPSSPSSPAL-SVKPNIDPQ 395
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 460 LPGDHLPHCLCLD 422
LPG LP+C+CL+
Sbjct: 383 LPGQKLPNCVCLN 395
>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 260 VSNNQPVLMSAPLKANVHRVVQPQRSQVVNQPMATPASVVQTDTKNTVIQSGAKVQ 427
+SN PVL PLK + SQ+V A +++T + ++ + G V+
Sbjct: 130 LSNGSPVLSEEPLKGASDTQILESDSQIV----AMIKELIETSIRPSIQEDGGDVE 181
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 46 NNSKPATDNNDPTAAPQGS 102
NN A D +P +AP+GS
Sbjct: 78 NNESTALDKKEPQSAPEGS 96
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 110 SQPQAQQIVVTQKQPPTLITTSTSNQ 187
+Q ++ I+++QK PTL+ S SN+
Sbjct: 162 AQNSSKVILISQKMKPTLLYKSLSNE 187
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 115 TSSATDSCDPEATSHSYHHVDQQPNDA 195
TSS D P ATS S H ++ P+ A
Sbjct: 547 TSSLLDHHSPLATSSSEHEMEATPSPA 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.127 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,309
Number of Sequences: 5004
Number of extensions: 38011
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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