Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322B04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 36 0.004
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.008
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 31 0.079
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 31 0.14
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 30 0.18
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 30 0.18
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 30 0.24
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.42
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 29 0.42
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 0.52
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 28 0.73
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 28 0.97
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 28 0.97
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 0.97
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 27 1.3
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 1.7
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 1.7
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 2.2
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 27 2.2
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 27 2.2
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.0
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 26 3.9
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 25 5.2
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 25 6.8
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 6.8
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 6.8
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 25 9.0
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 9.0
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.0
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 25 9.0
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.0
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 35.9 bits (79), Expect = 0.004
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +3
Query: 174 DDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTER 353
+D Y+Y + E E+E ++K FSSV Q E LS + LI+E L +AKF + R +
Sbjct: 410 NDLYWYLVVEIEDEPVSKLFSSVMFLFQKE-LSKSVEGRLIRETLSAQAKFVEKLLRISK 468
Query: 354 S 356
S
Sbjct: 469 S 469
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 34.7 bits (76), Expect = 0.008
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 KPKRNNRFRKIVLTKTHAPFNNNQFLMEIHK-PEPENAFNILQTPSARTRDSSFSVDSDD 179
+P NNRF KI F+N HK P ++ N+ S+ D + + +++
Sbjct: 299 EPIFNNRFIKIFWYNPSKGFHNRPKKFASHKSPTTSDSSNV---ESSEDVDPASLLQNEE 355
Query: 180 NYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSK 359
F+ L E+ + + + + + N K EL Q+ L + +K T+RS
Sbjct: 356 --FHKLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSG 413
Query: 360 MKRM 371
KR+
Sbjct: 414 NKRL 417
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 31.5 bits (68), Expect = 0.079
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Frame = +3
Query: 165 VDSDDNYFYALPEDEEEYLT--KEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLV 338
VDSDDN + ++EEE T KE +Q E + MT EL + +L + L
Sbjct: 546 VDSDDNIELSDSDEEEEKATARKESDEKGSSSQKELVDRMT--ELASQSILTPNDLKKLE 603
Query: 339 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVE 467
+ E++ + R+ S R + D + R ++ E
Sbjct: 604 ELREQAGVDRLVNGPKRSLKRPDDAVEADEIEGPRKKAKNDRE 646
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 30.7 bits (66), Expect = 0.14
Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Frame = +3
Query: 102 PENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSN-- 275
P++A+ + SA++ +S V D+ F+ + + E ++ + E ++ +RLS
Sbjct: 524 PKDAYAEYKGESAKSSESDLVVSDDEEDFFKVSKVANESISSNHEKLME-SESDRLSKKW 582
Query: 276 -------MTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMV 434
K+ I LL + + V + + ED++NS+D + + S+
Sbjct: 583 ENPQLLAQLKSRFITGSLLDSIEGQEEVSQDDEEGDFEDLEDEENSSDNEMEESSGSSVT 642
Query: 435 TDRDTSETSVETFTAED 485
+ + S V+ T +
Sbjct: 643 AENEESADEVDFQTERE 659
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 30.3 bits (65), Expect = 0.18
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +3
Query: 282 KNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETS 461
KN+++++ ++A + + ER K + EE+KD R + +++ ++
Sbjct: 5 KNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKR---LRLSENIPATIESKRVY 61
Query: 462 VETFTAEDPPSNEIWQRLKD 521
ET ED P E+ LKD
Sbjct: 62 DETI-IEDKPDEELQAELKD 80
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.3 bits (65), Expect = 0.18
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Frame = +3
Query: 81 MEIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQC 260
+E P+P + + S+F+ D+D NY PED+E + +E V + +
Sbjct: 23 IESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLK-PEDDE--VDEEVVPVKK--KP 77
Query: 261 ERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDR--DASIADKDSMV 434
+ S K + + ++ E + +E+ K + K S DA D D +
Sbjct: 78 SKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLS 137
Query: 435 TDRDTSETS 461
D + SE+S
Sbjct: 138 LDEEESESS 146
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 29.9 bits (64), Expect = 0.24
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Frame = +3
Query: 123 LQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQE 302
L+ P RD+ F + F + +D + + + S YE S T+ E +E
Sbjct: 148 LEAPKILKRDAMFKESWKNKCFISPQKDNQGFSKSKHLSTYEGETENGFSTSTEEEEEEE 207
Query: 303 YLLLEAKF-ENL-------VKRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSET 458
++ A + +NL ER + + D+ + D + DS V D D +
Sbjct: 208 EDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDERSDDDFLLGLISSDSSVDDHDNEQD 267
Query: 459 SVE 467
V+
Sbjct: 268 DVD 270
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.42
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 90 HKPEPENAFNILQTPSARTRDSSFSVDSDDNY-FYALPEDEEEYLTKEFSSVYEDAQCER 266
+ P +N F TP++R + ++ + FY + E+ E++ T E +YE R
Sbjct: 331 YSPWYKNNFGA-STPASRVSRNPYTAAQPRKHTFYQMYENIEKFFTTENGGLYESIVSGR 389
Query: 267 LSNMTKN 287
LS+ +++
Sbjct: 390 LSHFSRS 396
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 29.1 bits (62), Expect = 0.42
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 282 KNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSM----VTDRDT 449
KN+ + + +K +N+ K ++R+ + E + N+T D+ K + + +R+
Sbjct: 5 KNQKSPKPKVASSKLKNIKKSSKRNNSQSSTEPRKNATSLDSKKTTKKGVALPEIAEREL 64
Query: 450 SETSVETFTAEDPPS 494
++ +E F E+P S
Sbjct: 65 TQEDIEFFN-ENPSS 78
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 23.8 bits (49), Expect(2) = 0.52
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 369 MEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSN 497
++ K + + +SIA DS R+T + + T + DP S+
Sbjct: 273 LDRKKVDEVEEHSSIAKLDSEEKIRETKKKNSSTSLSPDPTSD 315
Score = 23.4 bits (48), Expect(2) = 0.52
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 195 LPEDE--EEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKM 362
LPE + T + SS+ + SN++ NE+ ++Y A N V + K+
Sbjct: 177 LPEQSPLSNFSTTKISSINVPSDILDFSNLSSNEIPKDYSSSTALLNNTVAVKQDHKL 234
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 0.73
Identities = 23/95 (24%), Positives = 41/95 (43%)
Frame = +3
Query: 147 RDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKF 326
R SS V S N+ L ++ S YED + E + +++ + + + +
Sbjct: 65 RTSSLPVPSSSNFKERLNNIGGLKRSRTLESSYED-ETETANKLSR---VSSLVSVIRQT 120
Query: 327 ENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSM 431
+ K ER + EE DN D D I+ ++S+
Sbjct: 121 IDRKKSLERRVREEQEEKTDNEDDNDVEISTQESL 155
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.9 bits (59), Expect = 0.97
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Frame = +3
Query: 237 SVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIA 416
S Y+D N+ K L++EY +E F + KR E ++ +E+KD+ D+ ++A
Sbjct: 922 SDYKDGLKVHEYNVIKG-LLEEYYNVEKLFSGINKREEDVILRLRDENKDD-VDKVIALA 979
Query: 417 DKDSMVTDRDTSETSVETFTAEDPPS------NEIWQRLKD 521
S + ++ ++ +P + N+I ++L D
Sbjct: 980 LSHSRIGSKNNLLITILDLMKSEPSTFVSLYFNDILRKLTD 1020
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 81 MEIHKPEPENAFNILQTPSARTRDSS 158
+E + E +NAFNILQT S RD +
Sbjct: 3 LEENVKEAKNAFNILQTLSVEDRDDA 28
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 348 ERSKMKRMEEDKDNSTDRDASIADKDSMVT----DRDTSETSVETFTAEDPPSNE 500
ERS ++ DK TD+ +IA+K S + ++ +SET E + P + +
Sbjct: 310 ERSTSRKPSADKAEKTDKTDAIAEKVSDIRLGDGEKKSSETDSEVAATKTPATED 364
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = +3
Query: 339 KRTERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSV-------ETFTAEDPPSN 497
KRT R K +E S D DKDS D +E ++ E F PPS
Sbjct: 145 KRTARPKKPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKFADKSQEEFNENGPPSG 204
Query: 498 E 500
+
Sbjct: 205 Q 205
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 27.1 bits (57), Expect = 1.7
Identities = 24/99 (24%), Positives = 44/99 (44%)
Frame = +3
Query: 207 EEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDKD 386
E+EY EFS+ ED + E + N + + E + + + E R S+ E++
Sbjct: 63 EDEY--SEFSN--EDDEAE-IDNSFADSIPNEPEIPDMQDE--YSRDSHSQQSVEEQNNT 115
Query: 387 NSTDRDASIADKDSMVTDRDTSETSVETFTAEDPPSNEI 503
+TD DAS+ + D + + + + P NE+
Sbjct: 116 TNTDEDASVNEFSVAADISDVNTLGKDNSESTEEPVNEV 154
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 87 IHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCER 266
I KP L+T +SS +V+ D+N + P+ + + K S + + ++
Sbjct: 93 IEKPVQSTTEVELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQK 152
Query: 267 LSNMTKNEL 293
+ + KN+L
Sbjct: 153 V--LKKNKL 159
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 297 QEYLLLEAKFENLVKRTERSKMKRMEEDKDNSTDRDASIADKDSM 431
QE LLE K E +K++ M+E DN T +A DK+S+
Sbjct: 10 QEKELLEMKERVAEMEAEAAKLRAMQEQLDNET--EALRNDKESI 52
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 447 YLCQSPYYLYLQSTHLCQCYCLYLPP 370
Y + Y LY T+L + C Y+PP
Sbjct: 360 YTLRRNYLLYAMDTYLPKSVCSYIPP 385
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 156 SFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFEN 332
SFS ++ YF +LP +E+ T+ S +++ C+R + + L+ +L + + +
Sbjct: 163 SFSFSNNTQYFASLP--QEDVCTENLSPLFKLLPCKRKAGIA--SLLDSHLFFDTDWHS 217
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 447 YLCQSPYYLYLQSTHLCQCYCLYLP-PFVSSSSAQSFLQGFQTLPLTEDILV*VRFLSYL 271
Y C +P Y+ + +C L L P V+ S L + TLP+ D V+ LSYL
Sbjct: 141 YCCTNPS-AYVSALLVCLKGMLQLDMPHVNILSKADLLCTYGTLPMKLDFFTEVQDLSYL 199
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 348 ERSKMKRMEEDKDNSTDRDASIADKDSMVTDRDTSETSVETFTAEDPP 491
E + K ++DKD+ D + + DK + D+S T + PP
Sbjct: 185 EEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 135 SARTRDSSFSVDSDDNYFYALPEDEEEYLTKE-FSSV 242
S ++D+ S F +PEDE+E+L K FSSV
Sbjct: 36 STSSKDTDTSSHMTHFGFKDVPEDEKEHLVKNVFSSV 72
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 389 IVFIFLHSFHLRALSPFYKVFK 324
+ + F+HS H +L P++K K
Sbjct: 787 LYYEFIHSLHQSSLLPYFKTLK 808
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 201 EDEEEYLTKEFSSVYEDAQCE--RLSNMTK--NELIQEYLLLEAKFENLVKRTERSKMKR 368
+++ E++ + +V D + RL N NEL+ E +L+ K + + + E + +
Sbjct: 382 QEQYEHIQSVYKNVLLDRESYIMRLGNKISENNELLNENRVLKEKLQTYLDKKESNVTSK 441
Query: 369 MEEDKDNST 395
++ +NS+
Sbjct: 442 IKSTAENSS 450
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 144 TRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSV 242
T SFS D+ A P DEEE L+ EF ++
Sbjct: 203 TEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTI 235
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +3
Query: 207 EEEYLTKEFSSVYEDAQCERLS------NMTKNELIQEYLLLEAKFENLVKRTERSKMKR 368
E++ L+KE + ER+S N+TK E I + A++ + T + KR
Sbjct: 61 EDDELSKEVEEAWNQIMAERISEPIHCENITKVEFILHHFDTTARYGPYLGMTRMQRWKR 120
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 321 KFENLVKRTERSKMKRMEEDKDNSTDRDASIA 416
KF+N S+ +R E+ DN D D A
Sbjct: 505 KFDNFESHIRSSRHRRFAENNDNFKDLDELFA 536
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 54 APFNNNQFLMEIHKPEPENAFNILQTPSARTRDSSFSVD 170
A NNN H+ PEN N+ T + +++++ S++
Sbjct: 585 ADLNNNLVKQIQHRVPPENQSNLEHTITTSSKNTTSSIN 623
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 228 EFSSVYEDAQCERLSNMTKNELIQEYLLLEAKFEN 332
EFS+ +D++ ERLS + K +QE + EN
Sbjct: 1832 EFSNNEDDSELERLSKLIKVPPLQELYSQMSSDEN 1866
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +3
Query: 261 ERLSNMTKNELIQEYL-LLEAKFENLVKRTERSKMKRMEEDKDNSTDRDAS 410
+++ ++ + + QE + LLEA++EN + R + ++ EED ++ + DA+
Sbjct: 251 KKIGSLKELAVPQESIELLEAEYENEMDRVLQMQIGGPEEDWNDLEEGDAA 301
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 9.0
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = +3
Query: 84 EIHKPEPENAFNILQTPSARTRDSSFSVDSDDNYFYALPEDEEEYLTKEFSSVYEDAQCE 263
E + EPE++ + T AR + +++ L D +E ED +
Sbjct: 156 ETSEGEPESSTSATTTSVARRTRQRLAEHLENSKKTILQHDNKE----------EDKEIH 205
Query: 264 RLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRMEEDK---DNSTDRDASIADKDSMV 434
N TK+E+ E E K + TE+ +DK S D+ + +K S +
Sbjct: 206 SEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQPSEEEEKTSDI 265
Query: 435 TDR 443
DR
Sbjct: 266 QDR 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,262
Number of Sequences: 5004
Number of extensions: 38584
Number of successful extensions: 177
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -