Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    37   0.002
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    28   0.97 
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.8  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   6.8  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   6.8  

>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = -2

Query: 520 PXKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSP 341
           P +Y+R +   T+ AMK+V ++  +R   +  +RL   R  E Q   + + +++     P
Sbjct: 79  PVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQELQEAQKLIAQNVPQFTEP 138

Query: 340 AAGLKQRQALEATEMEVEPETIE 272
              ++  +  E   +  E  T+E
Sbjct: 139 EGEVETAEVQEPQIVSDEEYTME 161


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 18/84 (21%), Positives = 40/84 (47%)
 Frame = -2

Query: 520 PXKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSP 341
           P K  +E   + I+A  K     +   N++++QR R+ R  E +   +    +I L    
Sbjct: 94  PPKTEKEKEKEPIQAKHK-----KNVENDFLLQRFRKVRIAEKKDSEQPSSHEIHLTDDD 148

Query: 340 AAGLKQRQALEATEMEVEPETIEV 269
                Q+Q +E+ +++  P+ +++
Sbjct: 149 DKTTLQKQMVESDQLKKNPQEVKL 172


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +2

Query: 386 SLPLYLSALSQSLHNIIITPSLSDLFHFLHSFDCFSPQF 502
           S+P +   +     NI++   L  ++++ +   C SP F
Sbjct: 43  SIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHF 81


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 2    FFFLLLRIYNFKNMLNHQNSDPANIYIQTNESLS 103
            F    LR+YN  +     NSD  +  +++NES++
Sbjct: 1164 FELFALRLYNALSKNYEMNSDIKDCIVESNESMN 1197


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 463 EEIRQRRSNNYIMQRLRQGREVEWQR 386
           + IR+ +SN+ ++QRL QG E +  R
Sbjct: 168 QSIRKAKSNSGLIQRLLQGTEQDKAR 193


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 127 CSHWISKYAQGFICLNVN 74
           C HW SK  +G +C  +N
Sbjct: 527 CLHWSSKLKKGILCGGMN 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,673
Number of Sequences: 5004
Number of extensions: 32932
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)