Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322B03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 49 2e-06
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 48 6e-06
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 34 0.060
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 29 1.7
04_01_0518 - 6795833-6796450,6799940-6800164 29 2.3
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 29 2.3
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 4.0
09_04_0167 + 15290059-15290188,15290779-15292070 28 5.2
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 27 6.9
11_02_0076 - 8059267-8059387,8059406-8059857 27 9.1
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 27 9.1
02_05_0394 - 28577229-28577982,28578078-28578346 27 9.1
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/85 (24%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = -2
Query: 520 PXKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLI--K 347
P +Y+R + +T++A+ + +IR R +I +R +QG+ + +RD +E+++DI ++ K
Sbjct: 78 PERYDRNVTEQTLKAISLITKIRHERQKKHITERQKQGKTKQRERDAKELEQDIQMLPKK 137
Query: 346 SPAAGLKQRQALEATEMEVEPETIE 272
+ K + ++ ++ + E +E
Sbjct: 138 VTLSTQKTKVVVKVSQQQTEENLME 162
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 47.6 bits (108), Expect = 6e-06
Identities = 21/86 (24%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = -2
Query: 520 PXKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSP 341
P +Y+R + +T++A+ + +IR R +I +R +QG+ + +RD +E+++DI ++
Sbjct: 116 PERYDRNVTAQTLKAIPLITKIRHERHKKHITERQKQGKTKQRERDAKELEQDIQMLPKK 175
Query: 340 AAGL---KQRQALEATEMEVEPETIE 272
L K + ++ ++ + E +E
Sbjct: 176 DTMLSTQKTKVVVKVSQQQTEENLME 201
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 34.3 bits (75), Expect = 0.060
Identities = 22/89 (24%), Positives = 45/89 (50%)
Frame = -2
Query: 502 ELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQ 323
++W + +K+ E ++ S + QR Q E WQR R++++ + +K A +
Sbjct: 303 KMWQRKTRKLKQGLETLKKVSTDKSKQRSEQDLEKMWQRKTRKLKQGLETLKKECADKSK 362
Query: 322 RQALEATEMEVEPETIEVVDAKGRKQIIE 236
+Q +E+E+E +I + + +Q IE
Sbjct: 363 QQ----SELELE-LSISISERDSLRQEIE 386
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 481 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEA 305
E +++ E+RQR +RL + RE+E QR+ R ++ ++R A EA
Sbjct: 526 ERLEREREMRQREEKEREQRRLEEERELEKQRERERAAR--QAVERATKEARERAAAEA 582
>04_01_0518 - 6795833-6796450,6799940-6800164
Length = 280
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -2
Query: 490 KTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK-QRQA 314
+ IE KK EE+ + R I + R++ + V Q+D +++ G + +RQ
Sbjct: 184 RQIEEEKKKEEVERGRLQKEIKEGRESLRKLRLKLGVDVPQQDQEIVQQLERGRQGKRQT 243
Query: 313 LEATEMEVEPETIE 272
+E E++VE E +E
Sbjct: 244 IE--ELQVEHEQLE 255
>03_01_0050 +
430744-431337,432131-432249,432539-433084,433177-433483,
433605-433773,433861-433960,435805-436103,436796-436869,
437007-437442,437622-437650
Length = 890
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -1
Query: 386 RRARSPERHLFDKVTSGWSETATSFRSHRNG 294
RRARSPER L ++ W TA+S S R G
Sbjct: 88 RRARSPERALVRRIAREW--TASSRTSPRGG 116
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 271 LLLSRVPLPFLWLLKLVAVSDQPLVTLSKRCLSGLLARLFATLPL 405
L L F W LK+V + L L+K + +L L TLPL
Sbjct: 458 LFLHNFQQAFTWSLKIVTATKSALSVLTKPIMGPILEVLEFTLPL 502
>09_04_0167 + 15290059-15290188,15290779-15292070
Length = 473
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = -1
Query: 386 RRARSPERHLFDKVTSGWSETATSFRSHRNGSGTRDNRSCGR*RQE 249
RRA HL + SG T R H G G +S GR R+E
Sbjct: 32 RRALQRRHHLRSRAESG--ATILELRHHGGGGGGGSGKSGGRSREE 75
>06_03_1208 - 28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 310 LKLVAVSDQPLVTLSKRCLSGLLARLFATLPLCPVS 417
L L +++Q ++S R LS +L + + LPLCP S
Sbjct: 966 LILNVIAEQHTDSISSRPLSSVLEPVISYLPLCPNS 1001
>11_02_0076 - 8059267-8059387,8059406-8059857
Length = 190
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1
Query: 413 TGQRGRVAKRRARSPERH 360
T QRG VA ARSP RH
Sbjct: 109 TAQRGAVASAGARSPTRH 126
>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 283 RVPLPFLWLLKLVAVSDQPLVTLS-KRCLSGLLARLFATLPLCPVSIA 423
R+PLP W+L V D P LS + A LF L L +S A
Sbjct: 1162 RLPLPVHWILSAVCCIDDPKANLSTSYAVDVSKAGLFFLLGLEAISAA 1209
>02_05_0394 - 28577229-28577982,28578078-28578346
Length = 340
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -2
Query: 358 SLIKSPAAGLKQRQALEATEMEVEPETIEVVDAKGRKQIIEAPVMVPAT 212
SL + G + L+ E+++EP+ ++D G + + VP T
Sbjct: 217 SLTTTTCVGAVSDELLDLPEIDIEPDIWSIIDGYGGDEPGDGDATVPCT 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,564,189
Number of Sequences: 37544
Number of extensions: 209218
Number of successful extensions: 663
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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