Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322B02f
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    85   5e-18
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    82   3e-17
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.1  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 84.6 bits (200), Expect = 5e-18
 Identities = 39/85 (45%), Positives = 48/85 (56%)
 Frame = +3

Query: 108 HHRIXMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNXDKLWTLVSEXTRLKYASAPDGKXP 287
           H R   DKYHPGYFGK+GMR FH  KN  + P +N D+LWTLV   TR KY        P
Sbjct: 40  HLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAP 99

Query: 288 VINIVKAXXXXXXXXXXXPKQPVIV 362
           VIN++++           P  PVI+
Sbjct: 100 VINVLQSGYGKVLGKGRLPDTPVII 124


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 82.2 bits (194), Expect = 3e-17
 Identities = 38/85 (44%), Positives = 48/85 (56%)
 Frame = +3

Query: 108 HHRIXMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNXDKLWTLVSEXTRLKYASAPDGKXP 287
           H R   DKYHPGYFGK+GMR FH  KN  + P +N D+LWTL+    R KY        P
Sbjct: 40  HLRSHFDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAP 99

Query: 288 VINIVKAXXXXXXXXXXXPKQPVIV 362
           VIN++++           P+ PVIV
Sbjct: 100 VINVLQSGYGKVLGKGRLPETPVIV 124


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 331 LPSNL*YPALTILMTGXLPSGAD 263
           LPS   +PALT+  TG + S  D
Sbjct: 379 LPSYNVFPALTVFFTGIMMSAHD 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,002
Number of Sequences: 5004
Number of extensions: 21130
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)