Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322B02f
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                         83   9e-17
03_04_0027 + 16593133-16593573                                         82   1e-16
02_01_0563 + 4134954-4135388                                           79   1e-15
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483...    28   3.4  
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790...    27   4.5  
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893...    27   5.9  
01_07_0325 - 42745611-42745700,42745939-42745971,42746069-427461...    27   7.8  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 83.0 bits (196), Expect = 9e-17
 Identities = 35/86 (40%), Positives = 53/86 (61%)
 Frame = +3

Query: 105 HHHRIXMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNXDKLWTLVSEXTRLKYASAPDGKX 284
           HHHRI  DKYHPGYFGK+GMR FH  +NK + P +N ++LW++V      + A A  GK 
Sbjct: 39  HHHRILFDKYHPGYFGKVGMRYFHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKA 96

Query: 285 PVINIVKAXXXXXXXXXXXPKQPVIV 362
           P++++ +            P++P++V
Sbjct: 97  PLLDVTQFGYFKVLGKGLLPEKPIVV 122


>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = +3

Query: 105 HHHRIXMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNXDKLWTLVSEXTRLKYASAPDGKX 284
           HHHRI  DKYHPGYFGK+GMR FH   N+  CP +N ++LW++V      K A A  GK 
Sbjct: 39  HHHRILFDKYHPGYFGKVGMRYFHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKA 95

Query: 285 PVINIVK-AXXXXXXXXXXXPKQPVIV 362
           PVI++ +             P++P++V
Sbjct: 96  PVIDVTQFGYTKVLGKGMLPPQRPIVV 122


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = +3

Query: 105 HHHRIXMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNXDKLWTLVSEXTRLKYASAPDGKX 284
           HHHRI  DKYHPGYFGK+GMR FH   N+  CP +N ++LW++V        A A  GK 
Sbjct: 39  HHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKA 93

Query: 285 PVINIVK-AXXXXXXXXXXXPKQPVIV 362
           PVI++ +             P++P++V
Sbjct: 94  PVIDVTQFGYTKVLGKGMLPPERPIVV 120


>11_03_0135 -
           10547460-10547558,10547926-10548086,10548183-10548306,
           10548566-10548729,10549803-10549883,10549973-10550097,
           10550200-10550430,10550566-10550588,10551055-10551539,
           10551678-10552075,10552903-10552988,10553120-10553397,
           10553494-10553714,10553927-10554018,10554148-10554213,
           10555855-10556022
          Length = 933

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 248 EAEVCICSRWQ-GPRHQYCQSWILQVARQRQTPQTTCHSK 364
           E ++ +CSR   G  H YC   ++Q   + +    TCHS+
Sbjct: 288 EEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSE 327


>08_02_1146 +
           24678142-24678258,24678550-24678587,24678997-24679012,
           24679874-24680002,24680073-24680229,24680337-24680530,
           24680668-24680916,24681196-24681309,24681949-24681990,
           24682402-24682572,24682932-24683104,24683378-24683624,
           24684046-24684130,24684401-24684510,24684714-24684977,
           24685885-24685950,24686431-24686525,24686780-24686858
          Length = 781

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 281 GPRHQYCQSWILQVARQRQTPQTTCHS 361
           GP H     WI +  +Q   P+   HS
Sbjct: 258 GPMHNAADKWITEFGKQNNNPEEWAHS 284


>08_01_0906 +
           8933230-8933797,8933894-8934543,8937956-8938615,
           8939751-8939817,8940421-8940724,8942993-8942996,
           8944539-8946449
          Length = 1387

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 142 PGWYLSMXIL*WCSPPALPRPALDA 68
           P W+  M IL WC P A P   LDA
Sbjct: 92  PHWWRRM-ILPWCMPSAAPGKDLDA 115


>01_07_0325 -
           42745611-42745700,42745939-42745971,42746069-42746182,
           42746325-42746417,42746502-42746597,42746820-42746924,
           42747027-42747284,42748740-42749402
          Length = 483

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -3

Query: 347 FGEFAFA*QLVVSSFDNIDDGXLAIWSRCILQPRXFRD 234
           F EF  +    V  F  +DD    IW R   Q   FRD
Sbjct: 373 FHEFVSSMNYDVCFFKELDDVYFEIWQRVTKQKMSFRD 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,705,478
Number of Sequences: 37544
Number of extensions: 146996
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)