Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322B01f
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   1.8  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   3.1  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    25   4.1  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    24   5.4  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    24   7.1  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    24   7.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   7.1  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    24   7.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    23   9.4  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 131  FLSQEVLNDCLFRNLRAHSEPAL*LFLDASQHFVIFFCCKTFSS 262
            F S  VLND LFRN   +S+P   L +       +F CC  F +
Sbjct: 1130 FPSPSVLNDTLFRNRINNSKP---LGVFRIHDPSLFACCYQFGA 1170


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = -1

Query: 313  VCSQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSEQTIIQDFLRQ 134
            + S+VST D      +     FTT  D + LT  +   K+     S       + ++L +
Sbjct: 1097 ISSRVSTNDTTNVAGIRSQRSFTTHIDLKKLTTRQNGAKK----SSYTGTNPCVLNYLNK 1152

Query: 133  KYPERA 116
             Y E A
Sbjct: 1153 IYAEAA 1158


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 104 YFKNGSFWIFLSQEVLNDCLFRNLR 178
           Y KNG +   + + ++ND L RN+R
Sbjct: 30  YHKNGPYNHVVIRPLINDTLLRNVR 54


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 271 SLAGAEGFTTEEDHEMLTRVEKQLKRRFAVG 179
           SL+G+E  T  E  E   ++EK  K+   +G
Sbjct: 106 SLSGSESETNSESEEDNFQIEKAFKQSLNIG 136


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 104 YFKNGSFWIFLSQEVLNDCLFRNLRAHSE 190
           Y +N  F   L+ EVL+D   RN+    E
Sbjct: 186 YLENNKFLTHLNNEVLHDNYTRNIEKLKE 214


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 46  TTFFAVIYAEAPLVXSSYVLL*EW 117
           T FFA ++A AP+V S  V+   W
Sbjct: 151 TRFFAGLFAGAPVVSSGGVMADLW 174


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 175  QVSEQTIIQDFLRQKYPERAILKVIHMMXRRGELQHRLQRKMLY 44
            + S+ T + + + QK  E  I   IH++    E +   QRK+ +
Sbjct: 1024 EASQTTNVAELVNQKISEMNIPGHIHLLRELEEEKSNTQRKIAH 1067


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 149 LNDCLFRNLRAHSEP 193
           LN C+F  LR HS P
Sbjct: 126 LNKCVFERLRPHSFP 140


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 286 HLAWTLGNRRKCFI 327
           HLA  +G+R KCF+
Sbjct: 922 HLALLVGSRHKCFL 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,107,547
Number of Sequences: 5004
Number of extensions: 16819
Number of successful extensions: 39
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)