Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322A11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 28 0.73
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 27 1.7
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 27 1.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 3.0
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 3.9
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 3.9
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 5.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 9.0
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.0
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 9.0
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Frame = +1
Query: 121 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 246
+ CD+ W C+N G+ L C NG+ +D K L D L N
Sbjct: 30 LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 272 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 394
L+ Q+PL + D A+ + +T G+AGT + A+ +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 272 LSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAP 394
L+ Q+PL + D A+ + +T G+AGT + A+ +P
Sbjct: 102 LTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 263 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 427
GH+ + S T TA+S + +SAT S T+ + + D+ T PAS+
Sbjct: 141 GHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSVSTGTSTDIVTLPPPASS 195
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 3.0
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 188 SLSTPQIPNXXXXXXXXXXXLSAERGHSL----SPQSPLLTVRDCTASSLMKTSATFSGT 355
SLST IP+ LS+ S S S +++ ++SS TS+T S +
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSS 293
Query: 356 AGTEKPPAISAAPDLPTTESPAS 424
+ + P +++ ++ S +S
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSS 316
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 145 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 255
C N V LK NG + S+ L+E C Y N C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 347 SGTAGTEKPPAISAAPDLPTTESPASACGLIRXRECKNEEVANGF 481
+ T TE PPA+ PTTE P ++ K E ++ GF
Sbjct: 521 ASTQPTENPPAMPDHNGSPTTEPPKPNAFELKEERLK-EIISGGF 564
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 281 QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 427
Q+ T T ++ ++T+ +GTAGTE A +A PTT + +A
Sbjct: 1191 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1238
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 281 QSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 427
Q+ T T ++ ++T+ +GTAGTE A +A PTT + +A
Sbjct: 1273 QATTATETQATTATEVQTTTGATGTAGTE-TQATTATEVQPTTGATGTA 1320
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 319 FPDENKCDVFWNCW 360
F D N D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +2
Query: 248 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 427
+S S+ PQS +ASS T +T S +S + +P+T S +
Sbjct: 468 VSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPS 527
Query: 428 CGLI 439
+I
Sbjct: 528 SSII 531
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/70 (27%), Positives = 25/70 (35%)
Frame = +1
Query: 148 DNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVECGERTQLEPPISTPHCSRLYGIFPD 327
+ V L TCGNG+ D E CD CGE + P C G D
Sbjct: 309 EKSVLRLGTCGNGIVEDG-------EECD------CGEDCENNPCCDGKTCKLTKGSLCD 355
Query: 328 ENKCDVFWNC 357
+ + + C
Sbjct: 356 DQQDACCYQC 365
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 414 LSVVGKSGAALIAGGFSVPAVPENVALVFIREDA 313
L++ +GAA +AGG + PA + A +E+A
Sbjct: 60 LNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEA 93
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +1
Query: 304 RLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAY 405
+L G D N C V CWN R + + Y
Sbjct: 93 QLEGTETDTNACTVVVGCWNKWLERVEIVQNIFY 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,889
Number of Sequences: 5004
Number of extensions: 39996
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -