Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322A11f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0548 - 4061829-4062956 31 0.42
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 29 1.7
12_02_0589 + 20850249-20850491,20850583-20851839 29 2.3
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 2.3
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 29 2.3
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 3.0
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 29 3.0
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 3.0
02_02_0183 + 7576901-7576908,7577666-7578176 29 3.0
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 28 4.0
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 28 4.0
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 28 5.2
01_06_1148 - 34895562-34895690,34896339-34896464,34896579-348969... 28 5.2
10_01_0001 - 22485-22526,23308-23436,24346-24473,24801-24862,253... 27 6.9
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455 27 6.9
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125 27 6.9
03_06_0069 - 31449319-31450368 27 6.9
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918 27 6.9
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 27 6.9
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 9.1
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 27 9.1
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 27 9.1
>07_01_0548 - 4061829-4062956
Length = 375
Score = 31.5 bits (68), Expect = 0.42
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 505 DLTGGWAAESVC-YFFVFALPXPDQP 431
+LTGGW VC YF V+ PD P
Sbjct: 65 NLTGGWCGPDVCRYFGVYCAAAPDDP 90
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 263 GHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPAS 424
G + +PQ+ +VR CT+ SL + SA GTA T + A SA +T S +S
Sbjct: 47 GGTPAPQAAASSVRRCTSPSLSRASAA-EGTASTNR--AQSAERRRSSTPSSSS 97
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 271 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRCRRFSVRLHRCRTSSI 134
A SSL T S S R ++ +WR+ R+ R+FS ++C +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 250 ECGERTQLEPPISTPHCSRLYGIF 321
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 6 LSSQYVFEVFISVSGRPR--RSCGPRVLQMPRRLRFLPSPHLL 128
L+S F+ ++GR C PR + PR L +L SPH+L
Sbjct: 329 LTSNLTFQEAYDMTGRILVVTVCSPRKHEPPRCLNYLTSPHVL 371
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 256 RTQRCEGSRSSRSSIWNLWRRKRDR 182
R RC G ++RS+ LWRR+R R
Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = -3
Query: 516 PALETSPGAGQPNPFATSSFLHSRXLISPHADAGLSVVGKSGAALIAGGFSVPAVPENVA 337
P++ T PG+ + N +++ HS+ PH AGL + KSG + S P +V
Sbjct: 878 PSMNTGPGSNKDNLAGSTTSGHSQVTGKPH-PAGLH-MEKSGVQTVT--ISAPPGKSDVN 933
Query: 336 LVFIREDAVQSR 301
+ ED V R
Sbjct: 934 KLKPAEDVVSHR 945
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 355 CWNGEASRYQCSPGLAYDRESRVCMWADQXXGVQKRRSSK 474
CW G + RY+CSP VCM + VQ R K
Sbjct: 77 CWRGLSRRYKCSPERTV---LSVCMLTGEMPRVQTSRLGK 113
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 280 GAQAVSSLRTQRCEGSRSSRSSIWNLWRRKRDRCRR 173
G V + +R EG S + W WRR+R RC R
Sbjct: 108 GGGGVGWMGMRRAEGGGSGSVARWRRWRRRR-RCGR 142
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +2
Query: 185 VSLSTPQIPNXXXXXXXXXXXLSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGT 364
+ S+P +PN AER +LS Q+P+++ + S M S G
Sbjct: 290 IGRSSPSVPNPPLGPR------GAERSSNLSSQTPVISSSGLSYGSGMHVGNANSRVNGN 343
Query: 365 EKPPAISAAP---DLPTTE 412
P + P D+P TE
Sbjct: 344 SVQPTVELLPSFKDVPNTE 362
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 248 LSAERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDL 400
L RG SP P T+S SAT +GT G + PP + + PD+
Sbjct: 33 LGLSRGAGPSPPPP---PSSSTSSFPAAASATAAGTGG-DAPPIVGSCPDM 79
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 266 HSL-SPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASACGLIR 442
H+L SP L +C+A L + +A +PPA +A ++ PA CGL
Sbjct: 207 HALPSPTLVLANPDECSALILPSSYRKLFSSAANLRPPAYAA------SQLPALICGLSA 260
Query: 443 XRECKNEEVANGFGCPA 493
+V NG C A
Sbjct: 261 QLPALCCQVINGASCGA 277
>01_06_1148 -
34895562-34895690,34896339-34896464,34896579-34896906,
34897127-34897216,34897284-34897360,34897519-34897593,
34897862-34897980,34899240-34899363,34899427-34899477,
34899590-34899688,34900104-34900214
Length = 442
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 519 EPALETSPGAGQPNPFATSSFLHSRXLISPHADAGLSVVGKSGAAL-IAGGFSVPAVPEN 343
EP+L+ AG PN + I PH D GL ++G A+ + F + +
Sbjct: 143 EPSLKW---AGNPNTTVVVKAYGLKATIQPHVDFGLKLLGADVMAIPVLYKFVQETIMDQ 199
Query: 342 VALVFI 325
VA +F+
Sbjct: 200 VASMFL 205
>10_01_0001 -
22485-22526,23308-23436,24346-24473,24801-24862,
25388-25585,25807-25898,26941-26994
Length = 234
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 139 WKCDNGVAELKTCGNGLAFDATDSKYLTEN-CDYLHNVECGERTQLEPPIS 288
W C G E CG + A ++ + C Y + CG +L+PP S
Sbjct: 9 WACTGGSQEA-ICGPEASKLAIAVPTISSSSCSYFYRYRCGRYEELKPPSS 58
>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
Length = 378
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 344 FSGTAGTEKPPAISAAPDLPTTESPAS 424
F+G AG PPA+S +P +P S
Sbjct: 334 FAGAAGFHAPPAVSVRSVIPVCAAPPS 360
>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
Length = 790
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/55 (38%), Positives = 24/55 (43%)
Frame = +2
Query: 254 AERGHSLSPQSPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESP 418
AER LS PLL SSL T+ + PPA S A L TT +P
Sbjct: 11 AERSSRLSHSRPLLRRAGSACSSLTTTTTSQHRHGRRRAPPAESNA--LTTTAAP 63
>03_06_0069 - 31449319-31450368
Length = 349
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 311 TASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPAS 424
+A S + +A S T G + PP AAP++ PA+
Sbjct: 296 SALSSVSAAAPTSNTVGMDLPPVSLAAPEMQYWNGPAA 333
>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
Length = 250
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -2
Query: 292 EWRLGAQAVSSLRTQRC---EGSRSSRSSIWNLWR 197
+WR + LR+QRC EG RS + +WR
Sbjct: 156 KWRRSGRCQRGLRSQRCTAREGFRSKEEMLGIVWR 190
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 338 ATFSGTAGTEKPPAISAAPDLPTTESPASACGL 436
A SGTA T P S+AP P+T +P A +
Sbjct: 489 ANSSGTANTAGPSP-SSAPSTPSTHTPGDAMSM 520
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 311 TASSLMKTSATFSGT-AGTEKPPAI-SAAPDLPTTESPAS 424
T SS+M++SAT GT A + P A+ SA P P T +P +
Sbjct: 152 TDSSMMQSSAT--GTQAAVQGPSAVASAVPMTPVTAAPTT 189
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 284 SPLLTVRDCTASSLMKTSATFSGTAGTEKPPAISAAPDLPTTESPASA 427
SPLL++R T ++ + +SA F G PA+SAA S A+A
Sbjct: 28 SPLLSIRTGTGTARLPSSAVFGGFT-----PALSAAHSRARFVSSATA 70
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 326 MKTSATFSGTAGTEKP-PAISAAPDLPTTESPASACGLIRXRECKNEEVANGFGCPAP 496
+KT A+ A + KP P+ S +P T+ SP++ + R N ++ P P
Sbjct: 73 LKTLASIRAPAPSPKPSPSPSPSPRRSTSASPSATLSSLVSRTFSNNAASSSSSKPLP 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,101,574
Number of Sequences: 37544
Number of extensions: 321811
Number of successful extensions: 1333
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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