Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    29   0.32 
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   1.7  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   3.0  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   5.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   5.2  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   5.2  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.0  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 112 LLRFDGGTNLYGLSIRHTNHPISKYKLAIVVHW 210
           L R++ G N +G S  H N+ I K+ +A ++HW
Sbjct: 593 LARWNLGYNDFGPSAFHYNYNIGKFVVAWLLHW 625


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 169 HPISKYKLAIVVHWYDSQITMLPVL 243
           H  S+YKL  V+H YD  IT   +L
Sbjct: 319 HGASRYKLLKVIHEYDVVITTYQIL 343


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 255 NDTLENGQHRYLRIIPVDYDCQLVFTDRMVGMAYGKPVQVGTTIEAKQ 112
           N   E  QH  +R IP   +C +V     V   Y  P Q+  T+E K+
Sbjct: 332 NSMPEEIQHNIIRSIPGLENCNIVRPAYGVMYDYVIPTQLKATLETKK 379


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 521 PXPPYFCREAVMRFGLKGGAAVVTILRP*NLYLK 420
           P  PYF   ++M+FG   G+A +  L    L+ K
Sbjct: 402 PVQPYFVLYSIMQFGFSVGSAPLVSLATKQLHPK 435


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 411 ATHLEIQVLRSQYSHN 458
           A HLE+Q+L  QY +N
Sbjct: 306 ARHLEVQILADQYGNN 321


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 180 TDRMVGMAYGKPVQVGTTIEAKQHTEQFRFRFRVSI 73
           T  +VG  +G PV V   I  K HT    F  + +I
Sbjct: 117 TGSLVGPLHGVPVSVKEHISIKNHTATASFLAKANI 152


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 132 YQLVRAFHTPYQPSYQ*IQVGNRSPLV*FSDNDVARSPV 248
           +Q    FHTP  P    +     SP+V   DN+   SP+
Sbjct: 133 HQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,339
Number of Sequences: 5004
Number of extensions: 47765
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)