Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0079 + 554635-556098                                             28   4.0  
03_04_0065 + 16984736-16984835,16984932-16985369,16985511-169856...    28   5.2  
01_06_1749 - 39636951-39638102                                         27   9.1  

>02_01_0079 + 554635-556098
          Length = 487

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 306 LLARFFIYCLDVWMALQ 356
           L+ RF +Y LDVW+ALQ
Sbjct: 203 LVDRFGVYILDVWLALQ 219


>03_04_0065 +
           16984736-16984835,16984932-16985369,16985511-16985635,
           16985747-16985881,16985954-16986012,16986082-16986843,
           16986973-16987118,16987151-16987251
          Length = 621

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 127 GGTNLYGLSIRHTNHPISKYKLAIVVHWYDSQITMLPVL 243
           G  N YGLS+ H N P S   L++ VH  ++ I + P L
Sbjct: 33  GVLNFYGLSLLHLN-PSSIAFLSVFVHLCEAYIGVEPFL 70


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 445 SIVTTAAPPFKPKRITA 495
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,168,963
Number of Sequences: 37544
Number of extensions: 335029
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)