Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    30   0.18 
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.2  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    26   3.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   3.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.0  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.9  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   9.0  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  

>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 139 EMLLHPELLSNEQLTHIIEQRHLRI--DGIEKM-LRDDLLDLFHQYCVPYGQ 285
           E  L P + S   L  IIE  H++   D I+ + ++D+L+D FH  CV   Q
Sbjct: 71  EAALRPAVGSVHDLVRIIETDHVQAARDFIQDVGIQDELIDAFHADCVELEQ 122


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +2

Query: 35  ILCVGAIKLQIISVSMLHVIKSSSLTSEKQWLFLTK 142
           +  + +  LQII ++ L ++KS +L  ++ + F+++
Sbjct: 251 VFAISSSSLQIIDINTLSLVKSINLKDDESFSFISR 286


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 139 EMLLHPELLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRK 291
           E +L+  LLS  +L  II     R    ++   D L++  ++YC    Q++
Sbjct: 5   EQILNDYLLSQGRLQSIISLEQWRQLFPQRYREDPLIERLYEYCTQQRQKR 55


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 280 GQRKYRDSGRGKILNRTRHISP--EPSRSLNKIK--ETRHT 390
           G   +++ G GK+  R  H+SP  E ++SL   +  E++HT
Sbjct: 88  GSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWRGSESKHT 128


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 319  LNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNSNNH 498
            LN+    S  P   +   KE   T    +    DLLS  ++RIK   +    +  +SNNH
Sbjct: 1869 LNKKFDSSARPFDEIEMEKEVL-TLKSNLAQKDDLLSSLVERIKQIEMFALKTQKDSNNH 1927

Query: 499  KRKS 510
            + ++
Sbjct: 1928 REEN 1931


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 175 QLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVP 276
           +L  I E+  L   GI K+L+DDLL +F+ +  P
Sbjct: 254 RLLKITEREFLLYTGILKILKDDLL-VFYTFIPP 286


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 172 EQLTHIIEQRHLRIDGIEKMLRDDLLDLFH 261
           EQL +I   R++RI G+E +L  D+ DL H
Sbjct: 199 EQLVYIEALRNMRIMGLE-ILNLDVQDLKH 227


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 280 GQRKYRDSGRGKILNRTRHISP-EPSRSLNK 369
           G R  R  GRG  +NR +H  P +   S+NK
Sbjct: 643 GMRTNRGRGRGGRMNRMQHPRPLQSGGSVNK 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,240
Number of Sequences: 5004
Number of extensions: 40097
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)