Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0489 - 24196037-24196105,24196199-24196279,24196358-241964...    31   0.56 
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    31   0.74 
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    30   0.98 
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107...    28   4.0  
10_01_0168 - 1883380-1883594,1884572-1888325                           27   6.9  
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204...    27   6.9  
03_05_0208 + 22006032-22006673,22006695-22007078                       27   6.9  

>11_06_0489 -
           24196037-24196105,24196199-24196279,24196358-24196438,
           24196513-24196614,24196693-24196782,24196865-24196945,
           24197021-24197122,24197198-24197287,24197368-24197448,
           24197524-24197622,24197720-24198055,24198142-24198228,
           24198318-24198413,24198499-24198732,24198792-24199036,
           24199119-24199383
          Length = 712

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 334 HISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTK 471
           HI+ + S   + +K TR   V+ I PP     G  ++  LEN ++K
Sbjct: 659 HITAKQSSIKSSVKRTRTNCVDSILPPDKAKQGPQRKGVLENTSSK 704


>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 280 GQRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHT--TVERIKPPPDLLSGHMKRIKL 453
           G +  R S  GK+  + +  S      L K  E R T  T+ R KPP D    H    KL
Sbjct: 278 GPKALRRSWEGKVDTKGKTNSDSKMTKLEKKPENRGTMATIPRRKPPVDEKVQHKDDSKL 337

Query: 454 ENVTTK 471
           +N   K
Sbjct: 338 QNPAKK 343


>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 211 IDGIEKMLRDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPE 348
           +  + K+ RD LLD      VPYG  + +D   GKI  +  H S E
Sbjct: 50  VGSLAKVFRDGLLDAVDLSLVPYGNARVKD---GKISCQVEHGSEE 92


>08_01_0136 -
           1077800-1077811,1077929-1078046,1079410-1079549,
           1079627-1080313
          Length = 318

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 283 QRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPP 414
           +RK R  GRG +  RT+++S   SR L K +E     V  ++ P
Sbjct: 8   RRKGRRGGRGNVKRRTKYLS--LSRFLIKKEEEEEVVVVAVRSP 49


>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 97  IFLFNVGKTMAVPHEMLLHPELLSNEQLTHIIEQRHLRIDGIEKMLR 237
           I L+ +GK      +     ELLSN    H++  RH   D  +  LR
Sbjct: 506 IALYVMGKECVTITDRSYRKELLSNRSTYHLLVSRHRTGDHFDDFLR 552


>05_01_0266 -
           2040555-2040722,2041248-2041349,2041461-2041958,
           2042372-2042479,2042559-2042753
          Length = 356

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
 Frame = +1

Query: 172 EQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPEP 351
           EQL H+ +    R +  ++ L+D++L +  +  +     K   +   ++L     +SP  
Sbjct: 172 EQLDHLQKDLESR-EYSQRQLKDEVLRI--ETDIMDAVAKVGSNKDNELLKILSDVSPRN 228

Query: 352 SRSLNKIKETRHTTVERIKPPPDLLSGHM--KRIKLENVTTKCSHMNSNNHKR 504
             +LNK+   +   + R++    +LS H   K  +LE+   K    +    KR
Sbjct: 229 IDNLNKLLNAKDAEIARLRDEIRILSAHWTNKTKELESQLEKQKRTDQELKKR 281


>03_05_0208 + 22006032-22006673,22006695-22007078
          Length = 341

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 280 GQRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVER 402
           G R+Y +  RG+   R   I+   SR+L++  E   T + R
Sbjct: 298 GSRRYNEENRGRQRMREEDINISHSRNLSRSVEPGETRIRR 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,256
Number of Sequences: 37544
Number of extensions: 231340
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)