Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322A08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68217-1|CAA92465.1| 461|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF000264-12|AAK70648.2| 467|Caenorhabditis elegans Hypothetical... 28 4.7
Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical p... 27 8.1
Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical p... 27 8.1
Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical p... 27 8.1
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 27 8.1
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 27 8.1
L13200-2|ABE73330.1| 810|Caenorhabditis elegans Hypothetical pr... 27 8.1
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z68217-1|CAA92465.1| 461|Caenorhabditis elegans Hypothetical
protein F58G6.1 protein.
Length = 461
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 154 PELLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRKYRDSGRGKIL 321
PE E LT I + ++ + +EK + DDL QY + K + RG+ L
Sbjct: 83 PEWPDREHLTAIFDNLDIQTNELEKTVCDDLPQTVTQYVNQFPDLKKKIEKRGRKL 138
>AF000264-12|AAK70648.2| 467|Caenorhabditis elegans Hypothetical
protein F43E2.1 protein.
Length = 467
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +1
Query: 178 LTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRKYRDS-GRGKILNRTRHISPEPS 354
L + R+ I+ + + +D + + Y V R R++ K L + + +P
Sbjct: 304 LNYRFNMRNGEIEALSQKDQDYQITILDAYDVRNPGRSARNALDLVKTLEALKSLLVQPH 363
Query: 355 RSLNK--IKETRHTTVERIKPPPDLL 426
+ K ++ TR+ T ER+ PPP +L
Sbjct: 364 EGMFKTVMEITRNRTYERVVPPPQVL 389
>Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 160 LLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYC 270
LL Q+ ++ RHL + ++ +RDD L L + C
Sbjct: 357 LLDCRQIAELVNLRHLSLKNNKEGVRDDSLQLIIKNC 393
>Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 160 LLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYC 270
LL Q+ ++ RHL + ++ +RDD L L + C
Sbjct: 357 LLDCRQIAELVNLRHLSLKNNKEGVRDDSLQLIIKNC 393
>Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical
protein B0564.6b protein.
Length = 423
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 160 LLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYC 270
LL Q+ ++ RHL + ++ +RDD L L + C
Sbjct: 255 LLDCRQIAELVNLRHLSLKNNKEGVRDDSLQLIIKNC 291
>Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.6a protein.
Length = 525
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 160 LLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYC 270
LL Q+ ++ RHL + ++ +RDD L L + C
Sbjct: 357 LLDCRQIAELVNLRHLSLKNNKEGVRDDSLQLIIKNC 393
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 400 RIKPPPDLLSGHMKRIK 450
RIK PP LL+ H+KR K
Sbjct: 260 RIKKPPQLLALHLKRFK 276
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 400 RIKPPPDLLSGHMKRIK 450
RIK PP LL+ H+KR K
Sbjct: 272 RIKKPPQLLALHLKRFK 288
>L13200-2|ABE73330.1| 810|Caenorhabditis elegans Hypothetical
protein ZK1236.3b protein.
Length = 810
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 211 IDGIEKMLRDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPE----PSRSLNKIKE 378
I ++KM DL +FH C+ QR R R +++ + + I+ + P+ ++NK K
Sbjct: 370 ISEVQKMRPSDLESIFHSICIASVQRIKR---RNELVQQLQEINAQSCKSPTMTMNK-KF 425
Query: 379 TRHTTVERIK 408
T +R++
Sbjct: 426 TLAKAYQRVQ 435
>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
protein ZK1236.3a protein.
Length = 1000
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 211 IDGIEKMLRDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPE----PSRSLNKIKE 378
I ++KM DL +FH C+ QR R R +++ + + I+ + P+ ++NK K
Sbjct: 560 ISEVQKMRPSDLESIFHSICIASVQRIKR---RNELVQQLQEINAQSCKSPTMTMNK-KF 615
Query: 379 TRHTTVERIK 408
T +R++
Sbjct: 616 TLAKAYQRVQ 625
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,595
Number of Sequences: 27780
Number of extensions: 221872
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -