Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544     55   3e-08
03_06_0504 - 34394442-34394729                                         52   2e-07
06_01_0725 + 5305839-5306279,5306816-5307028,5307229-5307675,530...    32   0.24 
09_04_0131 + 14917239-14918510,14918803-14918895                       29   1.7  
11_04_0044 + 12716841-12716883,12717630-12717702,12718935-127191...    28   5.2  
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    28   5.2  

>03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544
          Length = 136

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 25/59 (42%), Positives = 39/59 (66%)
 Frame = +1

Query: 157 TMTSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 333
           T T   +A   QA+E+ +L  Q+SQ+L+TGLD   LS  + LC+ G +PE LA +++E+
Sbjct: 6   TETGTESAAARQAKESLELAFQMSQILDTGLDRHTLSLLMALCDRGANPEALAALVREL 64


>03_06_0504 - 34394442-34394729
          Length = 95

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/53 (43%), Positives = 37/53 (69%)
 Frame = +1

Query: 175 NAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPEVLAHVIKEI 333
           +A   QA+E+ +L  Q+SQ+L+TGLD   LS  + LC+ G +PE LA +++E+
Sbjct: 5   SAAARQAKESLELAFQMSQILDTGLDRHTLSLLMALCDRGANPEALAALVREL 57


>06_01_0725 +
           5305839-5306279,5306816-5307028,5307229-5307675,
           5307768-5307917,5308185-5308486,5309718-5309758,
           5311294-5311968,5312343-5312386
          Length = 770

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 186 RPSAGNLSINPPDITTPQHGAGRGSTVNLH 275
           RPSA ++S  P D   P +GAG G+ + LH
Sbjct: 604 RPSALSISPPPHDADAPSYGAGAGAPLQLH 633


>09_04_0131 + 14917239-14918510,14918803-14918895
          Length = 454

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 223 ISQLLNTGLDVEALSTCIRLCELGVDPEVLAH 318
           I +   +G   EAL TC R+ E+GV+P V+ +
Sbjct: 222 IDEYCKSGNLDEALVTCTRMSEVGVEPNVVTY 253


>11_04_0044 +
           12716841-12716883,12717630-12717702,12718935-12719104,
           12719996-12720316,12720999-12721195
          Length = 267

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 157 TMTSERNAQVGQARETFQLIHQISQLLNTGLDVEALSTCIRLCELGVDPE 306
           T TS +  Q  + R+ F+L+     LL      EA  T  +   +G DPE
Sbjct: 206 TATSSKCCQTAEVRDLFELVFVDGLLLIVPDPSEATGTSSKTDGVGTDPE 255


>07_03_0111 +
           13535912-13535972,13536081-13536142,13536418-13536510,
           13537577-13537649,13537876-13538265,13538337-13538404,
           13539334-13539375,13540211-13540735,13540817-13540974,
           13541078-13541636,13542438-13542500,13542579-13542680,
           13542779-13543096,13543175-13543267,13543489-13543590,
           13543678-13543782,13544190-13544323,13545097-13545280,
           13545701-13545832,13546215-13546327,13546468-13546558,
           13547138-13549339
          Length = 1889

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 138 SLQFCNYHDIGEERSSRPSAGNLSINPPDITTPQHGAGRGSTVN 269
           +L++C Y  + +  +   +  N SI P DIT    G      +N
Sbjct: 447 NLRYCGYVAVAKVNNIEKAKVNTSIKPIDITDQPEGGAHALNIN 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,952,123
Number of Sequences: 37544
Number of extensions: 251774
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)