Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    84   1e-17
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    52   4e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    28   0.73 
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   1.7  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   3.9  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   3.9  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   5.2  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   9.0  
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    25   9.0  
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    25   9.0  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
 Frame = +3

Query: 126 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 305
           + VG  LP   L+E+ P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 306 KSDGVAEIVCVSVNDPYVMAAWGAQHN--TKGKVRMLADPSGNFIKALDLGTNLPP-LGG 476
            + G++ I  V+VND +V  AW    +   +  V  +AD +G F KA D G +    LG 
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAGFDASGLLGP 117

Query: 477 FRSKRXSMVIVDSKV 521
            RSKR + V+ + KV
Sbjct: 118 LRSKRYAAVVENGKV 132


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 34/106 (32%), Positives = 55/106 (51%)
 Frame = +3

Query: 126 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 305
           I+VGD +P   L  D     + + ++TA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 306 KSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKAL 443
           ++    E++ +S +      A+  + N      +L+DP G  IK L
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIKKL 146


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 180 NKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 350
           NK  + EL    KV++      +   C K   P Y   AD+L+ DG++  E+ C    D
Sbjct: 28  NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 332 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 243
           H+   S+RF+ +  LY    VC  TS  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  YPWHYRIHQSSVSASTSHFTIKHGTN 127
           +P   + H +S+S+   HF+++H  N
Sbjct: 653 FPQALKAHMNSISSPKRHFSLRHKKN 678


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 320 NSIRFQFICVLYVSRQVCFRTSRG 249
           NSI+  F+C++Y+S+ + ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 279 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLADPS 422
           GY+ +++ L  +G  + +   V++P   A W  +H     N +  + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 291 NADKLKSDGVAEIVCVSVND 350
           N D +   G A++VCV VND
Sbjct: 35  NKDTVSLAGKAQVVCVFVND 54


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 61  LPHSPIERQREHFTFHN*AWHQLRSGISCLLLIYSKILPLI 183
           L H  IE +++  T     WH  R   +C+  +YS I  +I
Sbjct: 39  LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMI 79


>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 231 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGA 377
           + P    P   + +  GY  +  +++SD + +I  VS+    V+ A GA
Sbjct: 295 STPDRPQPRLDRNNENGYAVSVGRIRSDSIFDIKFVSLVHNTVLGAAGA 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,910
Number of Sequences: 5004
Number of extensions: 44120
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)