Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS322A04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 188 2e-48
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 121 3e-28
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 100 7e-22
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 50 1e-06
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 35 0.041
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 34 0.071
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 34 0.071
Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical pr... 31 0.38
Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical pr... 31 0.38
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 31 0.50
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 29 2.7
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 29 2.7
Z32681-7|CAA83603.1| 108|Caenorhabditis elegans Hypothetical pr... 28 3.5
AB009658-1|BAA82662.1| 108|Caenorhabditis elegans Ceinsulin-2 p... 28 3.5
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 4.7
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 4.7
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 27 6.2
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 27 6.2
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 27 6.2
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 27 6.2
U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 27 8.1
AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical ... 27 8.1
AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 27 8.1
AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm (l... 27 8.1
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 188 bits (459), Expect = 2e-48
Identities = 89/129 (68%), Positives = 103/129 (79%)
Frame = +1
Query: 133 SSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCL 312
S K PW+EKYRP+ DIVGNE+ V RL V GN PNI+++GPPG GKTT++ L
Sbjct: 4 SEKQQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWAL 63
Query: 313 ARALLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTDG 492
AR LLG K+AVLELNAS++RGIDVVR++IK FAQ KVTLP GRHKI+ILDEADSMTDG
Sbjct: 64 ARELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDG 123
Query: 493 AQQALRRTM 519
AQQALRRTM
Sbjct: 124 AQQALRRTM 132
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 121 bits (292), Expect = 3e-28
Identities = 66/141 (46%), Positives = 87/141 (61%), Gaps = 9/141 (6%)
Frame = +1
Query: 124 KPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTI 303
K +++ ++NLPW+EKYRP D++V +E V L F + P+++ GPPG GKTTT+
Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79
Query: 304 LCLARALLG-VSFKDAVLELNASNDRGIDVVRNKIKMFAQQK------VTLPPGR--HKI 456
L AR + VLELNAS++RGIDVVRN I FAQ K + G K+
Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKL 139
Query: 457 VILDEADSMTDGAQQALRRTM 519
VILDEAD+MT AQ ALRR +
Sbjct: 140 VILDEADAMTKDAQNALRRVI 160
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 100 bits (239), Expect = 7e-22
Identities = 55/128 (42%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Frame = +1
Query: 151 LPWIEKYRPQTFDDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALLG 330
L W EKYRP+T DDI ++ V+ L + + P+++ GPPG GKT+ L R L
Sbjct: 15 LTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFP 74
Query: 331 VS-FKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG----RHKIVILDEADSMTDGA 495
+ F D VL+LNAS++RGI VVR KI+ F++ + + KI+ILDE D+MT A
Sbjct: 75 KNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREA 134
Query: 496 QQALRRTM 519
Q A+RR +
Sbjct: 135 QAAMRRVI 142
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 50.0 bits (114), Expect = 1e-06
Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 31/152 (20%)
Frame = +1
Query: 157 WIEKYRPQTF---DDIVGNEDTVSRLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARALL 327
W++KYRP+ D + + + + L F P+++ GP G GK T I CL R L
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLK-FLSADCMPHLLFCGPSGAGKKTRIKCLLRELY 62
Query: 328 GV---------------SFKDAVLELNASN--------DRGI---DVVRNKIKMFAQ--Q 423
GV S K ++ +SN D GI VV++ +K AQ Q
Sbjct: 63 GVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQ 122
Query: 424 KVTLPPGRHKIVILDEADSMTDGAQQALRRTM 519
+ K+V+L EADS+T AQ LRRTM
Sbjct: 123 IESTSQRSFKVVVLCEADSLTRDAQHGLRRTM 154
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 34.7 bits (76), Expect = 0.041
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 106 PEKKQVKPSSSKSTNLPWIEKYRPQTFDDIVGNEDTVSRLAVFAK-TGNAPNIIIAGPPG 282
PEKK K SSS+S + I D++ + +K T + +I ++G PG
Sbjct: 146 PEKKSRKESSSESDSEEIISTSSEGALKGRREEFDSLKLWIMKSKETNTSLSIYVSGQPG 205
Query: 283 VGKTTTILCLARALLGVSFKDAVLELNASNDR 378
GKT T + + ++ LG S + ++ ++N +
Sbjct: 206 TGKTATTMRVLKS-LGKSVRSCIVNCASTNTK 236
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 33.9 bits (74), Expect = 0.071
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 160 IEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 321
IE +R D +V DTV + + A +++ GPPG GKT T+L R+
Sbjct: 2499 IESHRVAAADLVVPTIDTVRHEMLLAAWLAEHKPLVLCGPPGSGKTMTLLAALRS 2553
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 33.9 bits (74), Expect = 0.071
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 160 IEKYRPQTFDDIVGNEDTVSR-LAVFAKTGNAPNIIIAGPPGVGKTTTILCLARA 321
IE +R D +V DTV + + A +++ GPPG GKT T+L R+
Sbjct: 2499 IESHRVAAADLVVPTIDTVRHEMLLAAWLAEHKPLVLCGPPGSGKTMTLLAALRS 2553
>Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical
protein D2030.2b protein.
Length = 470
Score = 31.5 bits (68), Expect = 0.38
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 256 NIIIAGPPGVGKTTTILCLARAL-LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT 432
N+++ GP GVGKT LAR L + ++ D + + G DV K+
Sbjct: 143 NVLLVGPSGVGKTFLTQTLARVLDVPIALCDCT-SMTQAGYVGEDVESVIQKLVQAAGGN 201
Query: 433 LPPGRHKIVILDEADSM 483
+ + IV LDE D +
Sbjct: 202 VEKAQQGIVFLDEVDKI 218
>Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical
protein D2030.2a protein.
Length = 586
Score = 31.5 bits (68), Expect = 0.38
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 256 NIIIAGPPGVGKTTTILCLARAL-LGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT 432
N+++ GP GVGKT LAR L + ++ D + + G DV K+
Sbjct: 259 NVLLVGPSGVGKTFLTQTLARVLDVPIALCDCT-SMTQAGYVGEDVESVIQKLVQAAGGN 317
Query: 433 LPPGRHKIVILDEADSM 483
+ + IV LDE D +
Sbjct: 318 VEKAQQGIVFLDEVDKI 334
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 31.1 bits (67), Expect = 0.50
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 IIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNAS-NDRGIDVVRNKIKMFAQQKVTL 435
+++ GPPG GKT C+A F + L + G +VR +F+ ++ L
Sbjct: 352 VLLFGPPGTGKTMIGRCVASQCKATFFNISASSLTSKWVGEGEKLVR---ALFSVARLKL 408
Query: 436 PPGRHKIVILDEADSMTDGAQQA 504
P ++ +DE DS+ ++
Sbjct: 409 P----SVIFIDEIDSLLSSRSES 427
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 30.7 bits (66), Expect = 0.66
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 238 KTGNAPNIIIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRG 381
+T PNI++ G PG GK+T +A LG F + E+ +N +G
Sbjct: 5 ETRRRPNILVTGSPGTGKSTLGQQVAEK-LGFVFIEVSKEVRENNLQG 51
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 30.3 bits (65), Expect = 0.87
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Frame = +1
Query: 262 IIAGPPGVGKTTTILCLARALLGVSFKDAVLELNASNDRGIDVVRNK---------IKMF 414
+++G PGVGKTT +A LG+ ++E+NAS+ R + K I+ F
Sbjct: 344 LLSGSPGVGKTTCAY-MACQQLGLQ----LVEMNASDVRSKKHLEAKIGELSGSHQIEQF 398
Query: 415 AQQKVTLPPGR---HKIVILDEADSMTDGAQQA 504
K P H I+I+DE D M+ +A
Sbjct: 399 FGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRA 431
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 118 QVKPSSSKSTNLPWIEKYRPQTFDDIVG 201
Q KPS L W++KY+P+ ++VG
Sbjct: 268 QPKPSGPPPA-LSWVDKYKPKRMGELVG 294
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 29.5 bits (63), Expect = 1.5
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Frame = +1
Query: 157 WIEKYRPQTFDDIVGNEDTVSRLAVFAKTG-----NAPNIIIAGPPGVGKTTTILCLARA 321
W E Q DD++ + R + G ++ ++++GP G+GK+T +AR
Sbjct: 294 WDECVFHQKVDDLLASLGEKEREVLHMDNGKIRRPSSKMLLLSGPAGLGKSTLARIVARQ 353
Query: 322 LLGVSFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPPG-RHKIVILDEAD 477
G S +++NAS+ R + + ++ + TL R +ILDE D
Sbjct: 354 -AGYS----TIDVNASDARTVADLNKVLEGAVKTSRTLDADQRPACLILDEID 401
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 IIIAGPPGVGKTTTILCLARAL-LGVSFKDAVLELNASND 375
++IAGPP GKT L +++ L GV F V SN+
Sbjct: 85 VLIAGPPATGKTAIALAMSQELGDGVPFVPLVASEVFSNE 124
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 28.7 bits (61), Expect = 2.7
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Frame = +1
Query: 160 IEKYRPQTFDDIVGNEDTVSRL-----------AVFAKTG-NAP-NIIIAGPPGVGKTTT 300
+EK +TFDDI G E + L + + G AP +I+ G PG GKT
Sbjct: 174 VEKTPKETFDDIGGCESQIQELKESVELPLTHPEYYEEMGITAPKGVILYGEPGTGKTLL 233
Query: 301 ILCLARALLGVSFKDAVLEL-NASNDRGIDVVRNKIKMFAQQKVTLPPGRHKIVILDEAD 477
+A + + +L + G +VR ++F K P IV +DE D
Sbjct: 234 AKAVANSTSATFIRATGSDLVQKQSGEGARLVR---QIFQMAKEQAP----SIVFIDEID 286
Query: 478 SM 483
++
Sbjct: 287 AV 288
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 178 QTFDDIVGNEDTVSRLAVFAKTGNAPNIIIA--GPPGVGKTTTILCLARAL 324
+ DD+ E + LAV + +I+ GPPG+GKT+ +A ++
Sbjct: 305 EAMDDV--KERVLEHLAVCKMNNSVKGMILCFTGPPGIGKTSIAKAIAESM 353
>Z32681-7|CAA83603.1| 108|Caenorhabditis elegans Hypothetical
protein F56F3.6 protein.
Length = 108
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 425 FCCANIFILFRTTSIPRSFEAFSSNTASLKDTPRRARAKHSIVVVFPTPGGPAII 261
F + +L + +F FS +DT R RAKH + + P PGG + +
Sbjct: 2 FSTRGVLLLLSLMAAVAAFGLFSRPAPITRDTIRPPRAKHGSLKLCP-PGGASFL 55
>AB009658-1|BAA82662.1| 108|Caenorhabditis elegans Ceinsulin-2
protein.
Length = 108
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 425 FCCANIFILFRTTSIPRSFEAFSSNTASLKDTPRRARAKHSIVVVFPTPGGPAII 261
F + +L + +F FS +DT R RAKH + + P PGG + +
Sbjct: 2 FSTRGVLLLLSLMAAVAAFGLFSRPAPITRDTIRPPRAKHGSLKLCP-PGGASFL 55
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 250 APNIIIAGPPGVGKTTTILCL 312
+P +I+GP G GKTTTI L
Sbjct: 43 SPCTLISGPNGTGKTTTIEAL 63
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 250 APNIIIAGPPGVGKTTTILCL 312
+P +I+GP G GKTTTI L
Sbjct: 29 SPCTLISGPNGTGKTTTIEAL 49
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 250 APNIIIAGPPGVGKTTTILCL 312
+P +I+GP G GKTTTI L
Sbjct: 29 SPCTLISGPNGTGKTTTIEAL 49
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 278 GGPAIIMLGALPVLAKTAKRDTVSSLPTISSKV-CGLYFSIHGKFVDLLEL 129
G A M G L D +SSL I+ C IHG+FVD ++L
Sbjct: 342 GDAACSMFGPLAKCVLDDNMDKMSSLTLINGTYDCLCPHPIHGQFVDCMQL 392
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 278 GGPAIIMLGALPVLAKTAKRDTVSSLPTISSKV-CGLYFSIHGKFVDLLEL 129
G A M G L D +SSL I+ C IHG+FVD ++L
Sbjct: 342 GDAACSMFGPLAKCVLDDNMDKMSSLTLINGTYDCLCPHPIHGQFVDCMQL 392
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 278 GGPAIIMLGALPVLAKTAKRDTVSSLPTISSKV-CGLYFSIHGKFVDLLEL 129
G A M G L D +SSL I+ C IHG+FVD ++L
Sbjct: 342 GDAACSMFGPLAKCVLDDNMDKMSSLTLINGTYDCLCPHPIHGQFVDCMQL 392
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 278 GGPAIIMLGALPVLAKTAKRDTVSSLPTISSKV-CGLYFSIHGKFVDLLEL 129
G A M G L D +SSL I+ C IHG+FVD ++L
Sbjct: 342 GDAACSMFGPLAKCVLDDNMDKMSSLTLINGTYDCLCPHPIHGQFVDCMQL 392
>U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756
protein.
Length = 425
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 409 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 501
+F QQ VT PP H+I L MT+ A++
Sbjct: 243 LFRQQTVTKPPNPHRISNLRAKVEMTNQAEK 273
>AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical
protein Y39A1A.12 protein.
Length = 636
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 220 RLAVFAKTGNAPNIIIAGPPGVGKTTTILCLARAL 324
R + K G + + I+G PG GKT T+ + ++
Sbjct: 282 REVIDPKRGESSAMYISGVPGTGKTATVRAVVNSM 316
>AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein
protein.
Length = 425
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 409 MFAQQKVTLPPGRHKIVILDEADSMTDGAQQ 501
+F QQ VT PP H+I L MT+ A++
Sbjct: 243 LFRQQTVTKPPNPHRISNLRAKVEMTNQAEK 273
>AC025716-11|AAK39605.1| 823|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 4 protein.
Length = 823
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Frame = +1
Query: 256 NIIIAGPPGVGKTTTILCLARALLGVSFK----DAVLELNASNDRGIDVVRNKIKMFAQQ 423
NI++ G PG K+ + + R L + + + L AS R D K Q
Sbjct: 464 NILLCGDPGTSKSQMLQYVYRLLPRSQYTSGKGSSAVGLTASVSRDADT-----KQLVLQ 518
Query: 424 KVTLPPGRHKIVILDEADSMTDGAQQALRRTM 519
L + + +DE D M + A+ L M
Sbjct: 519 TGALVLADNGVCCIDEFDKMNESARSVLHEVM 550
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,465
Number of Sequences: 27780
Number of extensions: 191230
Number of successful extensions: 658
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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