Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    28   0.73 
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   1.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   1.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   2.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.8  

>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 369 HVAAVTKLSSRYLREFILHCYHDVLVV 289
           + AAV K S  ++R F++HC+H +L +
Sbjct: 199 NTAAVVKRS--FIRNFLMHCFHKLLQI 223


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 95  KRMISQAINRITRFRQWELRTHGSRD 18
           KR   Q     TRFRQWE R    RD
Sbjct: 323 KRFTEQVRVEETRFRQWEQRLIAERD 348


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 223 LHSMLHIVPDAVKFLAGYGAAVDYKHIVITMQYK 324
           L S    + D VK++A      DY+ I++T  YK
Sbjct: 521 LESKAATIEDLVKYVAEKSGCSDYRKILVTETYK 554


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 382  ILIYPRSGGNEAIVKISSRIYTALLSRCACSRPRP 278
            + ++  S  N   + I  ++ T LL R  C+RP P
Sbjct: 2004 LYLFKSSSNNPQELLIKEQMTTVLLERIICNRPHP 2038


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 264 ELHSIGHNMKHTMQTQLLSSLGFNQNSC 181
           ELH IG N+K   +T  +  +G+ Q++C
Sbjct: 464 ELHKIGSNIKAEFKTMPIGKIGY-QSTC 490


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 161 LVCKVLGQEFWLKPSELNNC-VCIVCFIL 244
           L    L +EFW+K    NNC +C   F L
Sbjct: 47  LPTSTLSREFWMKDERTNNCSLCETEFTL 75


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 288  DRGPITGKELHSIGHNMKHTMQTQLLSSLGFNQNSCPNT 172
            +R P+TG+E  ++G    +   T++  ++  + N+ P T
Sbjct: 1619 NRTPLTGQESMNMGVYSPYRRSTEIAENMSMDGNAYPYT 1657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,828
Number of Sequences: 5004
Number of extensions: 43436
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)