Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895...    34   0.060
02_05_1067 - 33858215-33858321,33858422-33858527,33859014-338592...    29   2.3  
04_04_1647 + 35032328-35033803                                         29   3.0  
07_01_1097 - 10068431-10068655,10068797-10068880,10068945-100692...    28   4.0  
05_05_0281 + 23810828-23810918,23811011-23811109,23811284-23811318     28   5.2  
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463...    28   5.2  

>06_03_0152 +
           17287133-17287490,17288541-17288734,17289349-17289557,
           17289640-17289742,17290128-17290291,17290554-17290692,
           17290908-17291078,17291162-17291298,17291445-17291759,
           17291906-17291965,17292372-17292511,17292691-17292788,
           17292875-17293387
          Length = 866

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +3

Query: 273 LWGRGRLQAHRDNNAV*IREDILTIASLPPLRG*IKISKSLKVEHQRPLSSLLSTRVPQR 452
           LW    LQ H D++   +  +IL++A+L P +  + IS +  +E  R LS       P  
Sbjct: 715 LWELSLLQKHYDSSVSSMASNILSMANLNPTQNPVPISNASPLEAYRDLSMERKLSKPAN 774

Query: 453 KLV 461
           KL+
Sbjct: 775 KLL 777


>02_05_1067 -
           33858215-33858321,33858422-33858527,33859014-33859218,
           33859463-33859650,33859780-33859957,33860201-33860298,
           33860619-33860873,33861002-33861236,33861846-33861973
          Length = 499

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +1

Query: 352 RYRRYVGKSRYRRV*KWNIKDLSRVCLAREFLKGS*CCAHTSFSNSAISLS 504
           RYR       Y+ V K N+K LS + L +E L+G  C   TS   S+  LS
Sbjct: 286 RYRIPTKLQSYKLVCKSNLKPLSLIVLLQE-LRGEKCLVFTSSVESSHRLS 335


>04_04_1647 + 35032328-35033803
          Length = 491

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 331 SRIYTALLSRCA-CSRPRPHNRQGTS 257
           SR+  A L+R A  +RPRP +RQGT+
Sbjct: 47  SRLAAASLARAAHLARPRPRSRQGTA 72


>07_01_1097 -
           10068431-10068655,10068797-10068880,10068945-10069292,
           10069477-10069510,10069617-10070230,10079179-10079553,
           10079599-10079853,10079983-10080300
          Length = 750

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 381 ISKSLKVEHQRPLSSLLSTRVPQRK 455
           + + +K EHQRP S L   R+P+ K
Sbjct: 27  VGQKVKAEHQRPASLLQPLRIPEWK 51


>05_05_0281 + 23810828-23810918,23811011-23811109,23811284-23811318
          Length = 74

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 194 LKPSELNNCVCIVCFILCPML*SSLPVMG 280
           ++P +L   + + C +L P+L SS+PV G
Sbjct: 3   MRPRDLAAVLAMSCLLLLPLLVSSVPVSG 31


>02_01_0618 -
           4629776-4630037,4630188-4630330,4631200-4631254,
           4631539-4631603,4631714-4631857,4632141-4632194,
           4632363-4632410,4632466-4632541,4632624-4632722,
           4633000-4633097,4633615-4633719,4633816-4633924,
           4634137-4634252,4634332-4634496
          Length = 512

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 249 GHNMKHTMQTQLLSSLGFNQNSCPNTLHTK*ICITQMFILQTINDIETS 103
           GH ++H  +TQ   SL          L T  + I Q+ I++  ND+ TS
Sbjct: 235 GHAIEHWKETQHCYSLELETQKMGIWLSTISMVIIQLMIVEEYNDLVTS 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,294
Number of Sequences: 37544
Number of extensions: 256854
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)