Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS322A02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van gogh/...    32   0.22 
U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van gogh/...    28   3.5  
U61953-10|AAK82911.1|  613|Caenorhabditis elegans Hypothetical p...    27   8.1  
U61953-9|AAK82910.1|  748|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U61953-8|AAC48078.1|  746|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform b protein.
          Length = 529

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 170 KVLGQEF-WLKPSELNNCVCIVCFILCPML*SSLPVMGPRXXXXXXXXQCSIN 325
           +V+G+ F WL  S L   +CI+  +  P++  SLP++ PR        QC ++
Sbjct: 92  RVIGRRFVWLLASSL---LCIISVVSAPIM-CSLPIIAPRFGFSMPAIQCDVD 140


>U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform a protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 191 WLKPSELNNCVCIVCFILCPML*SSLPVMGPRXXXXXXXXQCSIN 325
           WL  S L   +CI+  +  P++  SLP++ PR        QC ++
Sbjct: 103 WLLASSL---LCIISVVSAPIM-CSLPIIAPRFGFSMPAIQCDVD 143


>U61953-10|AAK82911.1|  613|Caenorhabditis elegans Hypothetical
           protein R08C7.10c protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 277 HNRQGTSQHRAQYEAYYANAVIEFTWF*PKFLP*HLAHQINMYYTDVYTSNYQR 116
           H+ +       Q E +  NA+  FT+  PKF     ++ IN+  T + T+  +R
Sbjct: 503 HDNELCCSKLGQIEGFLPNAITTFTYLAPKFGK-ENSYDINVMMTSLLTNLVER 555


>U61953-9|AAK82910.1|  748|Caenorhabditis elegans Hypothetical
           protein R08C7.10b protein.
          Length = 748

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 277 HNRQGTSQHRAQYEAYYANAVIEFTWF*PKFLP*HLAHQINMYYTDVYTSNYQR 116
           H+ +       Q E +  NA+  FT+  PKF     ++ IN+  T + T+  +R
Sbjct: 505 HDNELCCSKLGQIEGFLPNAITTFTYLAPKFGK-ENSYDINVMMTSLLTNLVER 557


>U61953-8|AAC48078.1|  746|Caenorhabditis elegans Hypothetical
           protein R08C7.10a protein.
          Length = 746

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 277 HNRQGTSQHRAQYEAYYANAVIEFTWF*PKFLP*HLAHQINMYYTDVYTSNYQR 116
           H+ +       Q E +  NA+  FT+  PKF     ++ IN+  T + T+  +R
Sbjct: 503 HDNELCCSKLGQIEGFLPNAITTFTYLAPKFGK-ENSYDINVMMTSLLTNLVER 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,721,002
Number of Sequences: 27780
Number of extensions: 237238
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)