Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321H11f
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   6.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.4  

>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 77  LQHNNNLKXPVIISLITSXYTT 142
           L+H NN + P + + I S YTT
Sbjct: 104 LKHRNNERLPYLCNAIWSFYTT 125


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 469  KEIVELKLALQDATSETKSLQDSVNRMSRXESENHE 362
            K I +LKLALQD       L D ++  ++  ++  E
Sbjct: 928  KTIEDLKLALQDELKNRNLLMDDISSYNKQTTKLQE 963


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -3

Query: 472  RKEIVELKLALQD---ATSETKSLQDSVNRMSRXE----SENHEVYIDTDSSINN 329
            +KEI EL   L+D   AT++ K+  D +N+  R +     E   + I  + S++N
Sbjct: 1375 KKEIAELSSRLEDNQLATNKLKNQLDHLNQEIRLKEDVLKEKESLIISLEESLSN 1429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,031
Number of Sequences: 5004
Number of extensions: 16700
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)