Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321H11f
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-2|AAM48539.1|  373|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U13876-1|AAM48538.1|  353|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z92777-7|CAI79120.1|  294|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF039047-10|AAB94229.2|  400|Caenorhabditis elegans Hypothetical...    27   10.0 
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    27   10.0 

>U13876-2|AAM48539.1|  373|Caenorhabditis elegans Hypothetical
           protein F57B9.7b protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 478 NARKEIVELKLALQDATSETKSLQDSVNRM 389
           +A K++ E+KL +QD   E  + Q +V RM
Sbjct: 279 DAAKQLAEMKLKMQDLERENTNQQGNVIRM 308


>U13876-1|AAM48538.1|  353|Caenorhabditis elegans Hypothetical
           protein F57B9.7a protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 478 NARKEIVELKLALQDATSETKSLQDSVNRM 389
           +A K++ E+KL +QD   E  + Q +V RM
Sbjct: 259 DAAKQLAEMKLKMQDLERENTNQQGNVIRM 288


>Z92777-7|CAI79120.1|  294|Caenorhabditis elegans Hypothetical
           protein C17H1.10 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 126 VINEIITGXFKLLLCCKY-IDYMKTXNKLIKFVQXNLEKKKKK 1
           VI++++    K+L   KY  DY  T  K+IK++   +EKK  K
Sbjct: 153 VISDLLKD-LKILCEDKYNYDYSPTDMKIIKYMSDKIEKKISK 194


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
 Frame = -3

Query: 484  LSNARKEI-VELKLALQDATSETKSLQDSVNRMSRXES-------ENHEVYIDTDSSIN 332
            L NA+K +  E K+ L++A  + ++  D +N MS  +S       + H +Y DT  S+N
Sbjct: 1785 LINAKKVLPFENKIVLEEAKLQLQT-SDELNGMSLLDSIISKNFGDLHTIYTDTQQSVN 1842


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
 Frame = -3

Query: 484  LSNARKEI-VELKLALQDATSETKSLQDSVNRMSRXES-------ENHEVYIDTDSSIN 332
            L NA+K +  E K+ L++A  + ++  D +N MS  +S       + H +Y DT  S+N
Sbjct: 1802 LINAKKVLPFENKIVLEEAKLQLQT-SDELNGMSLLDSIISKNFGDLHTIYTDTQQSVN 1859


>AF039047-10|AAB94229.2|  400|Caenorhabditis elegans Hypothetical
           protein K11D12.9 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 466 EIVELKLALQDATSETKSLQDSVNRMSRXESE 371
           E+ ELK  L+D+  + K  +D +NR+     E
Sbjct: 155 EVQELKRLLEDSEQDLKDCKDEMNRLMEERVE 186


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
 Frame = -3

Query: 484  LSNARKEI-VELKLALQDATSETKSLQDSVNRMSRXES-------ENHEVYIDTDSSIN 332
            L NA+K +  E K+ L++A  + ++  D +N MS  +S       + H +Y DT  S+N
Sbjct: 1785 LINAKKVLPFENKIVLEEAKLQLQT-SDELNGMSLLDSIISKNFGDLHTIYTDTQQSVN 1842


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,633,949
Number of Sequences: 27780
Number of extensions: 89593
Number of successful extensions: 251
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)