Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321H08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.82 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 513 KAKYSNVFFLPKYSEIRPEGTAPNTAPKHKSDAT 412
           K ++ +++FL  YS +     +P T P   +  T
Sbjct: 364 KPEFGSIYFLGNYSLVPTTTASPTTEPSTTTSTT 397


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = -1

Query: 452 QRQTPLPNTRVTP-------PRILGYLTTPDEF*SFHHKSNSALPSPVS 327
           +R  PLP  R+         PR +   TTPD F    +K+  +LPS ++
Sbjct: 635 ERLPPLPPKRIRKMPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLT 683


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 106 EGCGTAGQSKWPPQSPRPHGDNSGYQKGYIRNH 204
           E   TA ++  PP  P  HGD++  Q    + H
Sbjct: 262 ESMKTARENPGPPGVPGDHGDHAPKQTVRFKVH 294


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 106 EGCGTAGQSKWPPQSPRPHGDNSGYQ 183
           E   TA ++  PP  P  HGD++  Q
Sbjct: 323 ESMKTARENPGPPGVPGDHGDHAPKQ 348


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 106 EGCGTAGQSKWPPQSPRPHGDNSGYQ 183
           E   TA ++  PP  P  HGD++  Q
Sbjct: 323 ESMKTARENPGPPGVPGDHGDHAPKQ 348


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 187 PFDIRNCLHADEDFGVAILTVPLF 116
           P D +NC    E +G  +L V ++
Sbjct: 169 PLDSQNCTVEIESYGYTVLDVVMY 192


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
 Frame = +1

Query: 136  WPPQSPR-PHGDNSGYQKGY 192
            W P  P   HGD  G+  GY
Sbjct: 1027 WSPPLPELRHGDIQGFNVGY 1046


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
 Frame = +1

Query: 136  WPPQSPR-PHGDNSGYQKGY 192
            W P  P   HGD  G+  GY
Sbjct: 1023 WSPPLPELRHGDIQGFNVGY 1042


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 176 PELSPCGRGLWGGHFDCPAVPHPS 105
           P LS  G+ LW   F C A  +P+
Sbjct: 299 PPLSLHGQLLWREFFYCAATKNPN 322


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 199 NHHAICGH 222
           NHHAI GH
Sbjct: 285 NHHAILGH 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,145
Number of Sequences: 438
Number of extensions: 4591
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)