Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321H06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    30   0.24 
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    27   1.7  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    25   9.0  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -3

Query: 498  FHKMTRYASPHTHTKRSR*YCSLPARARSNLVSVLYLINKKTSAWSTDDAEPPNNSFNLT 319
            F++++  +S H +   S+    +PA + + L + LY        WS+ D   PNNS  L+
Sbjct: 1770 FNEISSVSSIHVYHDESQPPVEMPAESDTPLQNKLY----HPGMWSSSDIRIPNNSSQLS 1825

Query: 318  LQN 310
            + +
Sbjct: 1826 IDS 1828


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 190 IIPHHGNCFILNYLNEIR 243
           ++P HGN ++LN  N+++
Sbjct: 3   LVPEHGNVYVLNQTNQLK 20


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -3

Query: 189 GPIAEQ*WNSNHSKKNRNL---EKIKFLLRLLQIQFYIELVCARSFGSPKIQEL 37
           G   ++ W S  ++ NR+L   E I  L RLL+      L C  +   P  Q L
Sbjct: 278 GQYPKRDWYSFVNRDNRSLANDEAIDLLNRLLRYDHQERLTCQEAMAHPYFQVL 331


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 381 KKTSAWSTDDAEPPNNSFNLTLQNNSIVGDVSLTSL 274
           +KT++++     PP N  N+ L   S + + S T +
Sbjct: 156 RKTASYTNSPVTPPINDKNILLPEQSPLSNFSTTKI 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,646
Number of Sequences: 5004
Number of extensions: 37161
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)