Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321H06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0332 - 16843295-16843356,16843884-16846656                       28   5.2  
03_02_0127 + 5777564-5779879                                           28   5.2  
01_06_0937 + 33175966-33178020                                         28   5.2  
11_01_0387 + 2922208-2922704,2922956-2923088,2923487-2923549,292...    27   6.9  
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    27   6.9  

>10_08_0332 - 16843295-16843356,16843884-16846656
          Length = 944

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 384 NKKTSAWSTDDAEPPNNSFNLTLQNNSIVGDVSLTSLCASQLEF*SISN 238
           NK T   S+D  +  N ++ L++  NSI G++  T    S L+F  +SN
Sbjct: 614 NKLTGELSSDWGQCTNLTY-LSINGNSISGNLDSTFCKLSSLQFLDLSN 661


>03_02_0127 + 5777564-5779879
          Length = 771

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 390 LINKKTSAWSTDDAEPPNNSFNLTLQNNSIVGDVSLTSLCASQLE 256
           L N +     TDDA P  +S N     N+++GD SL++  +S++E
Sbjct: 390 LSNLEAEENQTDDASPCQSSKNSIAVENAVLGD-SLSTENSSEIE 433


>01_06_0937 + 33175966-33178020
          Length = 684

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 473 PHTHIQSAHAN--TAAYPRGRAPTSSPYYT*STRRRQLGARTTL 348
           PH H+ +AH    TAA  R  AP++S     + R R+L AR  L
Sbjct: 16  PHHHLHAAHHAHLTAAATRPEAPSASSPNPANARLRRLIARDDL 59


>11_01_0387 +
           2922208-2922704,2922956-2923088,2923487-2923549,
           2923564-2923680,2925040-2925399
          Length = 389

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -1

Query: 356 TTLNPQITLLT*LYKTTRSSVTF 288
           TTL+ Q+TLL  L++TT SS  F
Sbjct: 200 TTLSTQLTLLQLLHRTTSSSFEF 222


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 399 RRRGWSAPARVGCSISVSAL 458
           RR+GW+APA  G S+ V  L
Sbjct: 687 RRKGWAAPASGGGSVGVGIL 706


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,986,333
Number of Sequences: 37544
Number of extensions: 230600
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)