Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321H03f
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    27   0.98 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.7  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   2.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   6.9  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    24   6.9  

>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 115 REFIKNNYVNIKKENPNFPIL 177
           + F+ +NYV + +E+PNF IL
Sbjct: 21  KSFLHSNYVQLIQESPNFLIL 41


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/69 (20%), Positives = 32/69 (46%)
 Frame = +1

Query: 88  QTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEKSTPLTNLSA 267
           Q   +   +R+      +N+K+ + + P    E   I+P  ++RY++  E    L  +  
Sbjct: 179 QDDNRVSDIRQMENRRELNVKRRSVSSPA---EDLAIRPLSFSRYKKAEEIPESLPPIKG 235

Query: 268 NDVLSAIKQ 294
            D  S++++
Sbjct: 236 RDSFSSVRE 244


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 71  NSFSAPPRRSAIFTNY 24
           N+FSAPPRRS  +  Y
Sbjct: 140 NAFSAPPRRSRGYNTY 155


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 130 NNYVNIKKENPNFPILIRECSG 195
           N  ++I K NP FPI+++   G
Sbjct: 704 NAVISIAKANPTFPIVLQWTGG 725


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 354 LIKHLLKNNYIIFNLNSLH 298
           ++K LLKNNY+I  L +L+
Sbjct: 824 VVKALLKNNYLIAELLTLN 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,349
Number of Sequences: 5004
Number of extensions: 25655
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)