Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321H03f
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149     78   2e-15
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723           42   2e-04
05_01_0338 + 2665412-2665564,2665647-2665766,2666344-2666397,266...    29   0.92 
09_03_0123 - 12512116-12512442,12512742-12512846,12512928-125130...    27   6.5  
08_01_0203 + 1639993-1641141                                           27   6.5  

>04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149
          Length = 70

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 31/60 (51%), Positives = 44/60 (73%)
 Frame = +1

Query: 49  LGGALKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYER 228
           L   +KE+R   CQ+S  S   REF+K NY +IK  NP+ P+LIRECSG++P++WARY++
Sbjct: 7   LSRGVKEIRFLFCQSSPASAPAREFVKKNYGDIKARNPSLPVLIRECSGVEPQLWARYDK 66


>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
          Length = 119

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = +1

Query: 37  MALRLGGALKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWA 216
           MALR    L++L ++ C     S G+R F++ +    K++NP+  ++     G  P +  
Sbjct: 1   MALRGVWQLQKLVVNYCDWGGSSRGIRAFMEAHLPAFKEKNPHLEVVTELVRGQHPNLKG 60

Query: 217 RYERGAEKSTPLTNLSANDVL 279
            Y+   E+   + NL+  D+L
Sbjct: 61  IYKNHNERVVCVRNLAPEDIL 81


>05_01_0338 +
           2665412-2665564,2665647-2665766,2666344-2666397,
           2666583-2666660,2667608-2667652,2668327-2668434,
           2668629-2668706,2669352-2669457,2669622-2669680,
           2670465-2670564,2670932-2671011,2671132-2671188,
           2671321-2671424,2671799-2671886,2671971-2672056,
           2672140-2672185,2672246-2672317,2672541-2672601,
           2672692-2672936
          Length = 579

 Score = 29.5 bits (63), Expect = 0.92
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 30  CENGTPPGRSTERIAYTFMSNQQ 98
           CE GT P RSTERIA+ ++++Q+
Sbjct: 360 CE-GTVPFRSTERIAFRYLTSQK 381


>09_03_0123 -
           12512116-12512442,12512742-12512846,12512928-12513091,
           12513282-12513480,12514368-12514585,12514674-12514743
          Length = 360

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 91  TSKQSEGVREFIKNNYVNIKKENPNFPILIRECS 192
           TSKQ++G REF     +  + ++PN   LI  C+
Sbjct: 107 TSKQADGEREFRVEIDILSRLDHPNLVTLIGYCA 140


>08_01_0203 + 1639993-1641141
          Length = 382

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 61  LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSG 195
           LKE  I    TSK+ EGV E     Y  +K   P+F + + E  G
Sbjct: 322 LKEACIEFLATSKKMEGVME--SQGYEKMKLSCPSFMVDLWEIIG 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,444,479
Number of Sequences: 37544
Number of extensions: 141646
Number of successful extensions: 303
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)