Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321G10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.2  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    26   3.0  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   3.9  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   5.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.8  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    25   9.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.0  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -3

Query: 450 ETTCCCLLSFVNICSMDSQVGGAGACSSTYRAASKSTGDE 331
           E  C  LLS  + C     +G  G CS T     + T +E
Sbjct: 476 ENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRCTANE 515


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -3

Query: 513 ISANSLSQLSRCCDIKWRAFPETTCCCLLSF 421
           +    ++   R C I WR  P T C   + F
Sbjct: 364 VEVKQINTFIRECSIYWRILPSTRCALSMDF 394


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 415 VHEAQEAATGGLWKSPPFDIATARQLR 495
           V  A E  TG L++ PP   A  RQLR
Sbjct: 144 VASAIETLTGALFQRPPLISAVKRQLR 170


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 308 REIENVYFSSPVDFDAARYVLEHAPAPPT 394
           + I+N    SP+    A+Y + H   PP+
Sbjct: 135 QRIKNAKMKSPISTHLAKYSIHHMGTPPS 163


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +2

Query: 173 INNQNK*LRSCNMLSNDVVENRRGPPGVNSRSLSSAHSAADLEILREIENVYFSSPVDFD 352
           +N     L      +ND   NRR   G +  S+SS  +    +   E  +   S+P  FD
Sbjct: 177 LNQSRSNLPQMTREANDNDVNRRNSRGSSQGSISSFRNPDSRKQYEETTSASLSAPGAFD 236

Query: 353 AAR 361
           A +
Sbjct: 237 ALK 239


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 246 GPRRFSTTSLDSMLQDLSYLFWLFIET 166
           G R+ S  S +  LQD+SYL    +E+
Sbjct: 66  GKRQISKASQEQKLQDISYLLRTCVES 92


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 138 YALRTYDLEVFQ*ITKINNSGLATCC 215
           YAL +YD+E F+ +  + + G    C
Sbjct: 58  YALSSYDIEAFKKVLSLISQGAEKIC 83


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +2

Query: 212 LSNDVVENRRGPPGVNSRSLSSAHSAADLEILREIENVYFSSPVDFDAARYVLEHAPAPP 391
           L ND    RR     NS S SSA S++  +   E++  +  S  +  ++ Y L     PP
Sbjct: 16  LQNDEELARRLQDEWNSSSPSSAPSSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPP 75

Query: 392 TCESIEHMFTKLKRQQQ 442
           +        +  KR +Q
Sbjct: 76  SKNPTSSSLSTRKRWRQ 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,183
Number of Sequences: 5004
Number of extensions: 30132
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)