Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321G07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 1.7
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 3.0
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 26 3.0
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 3.9
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 5.2
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.8
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi... 25 6.8
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 6.8
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 25 6.8
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 6.8
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 9.0
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 311 RAPSVRPYGSGFRFLPALAEEYRVIQAYLAGASFADTAIKWYCYALEDIPARVAIRGEEG 490
R SV GSG+ FL + + + + AI +C+AL + V + G+ G
Sbjct: 138 RDHSVYGVGSGYEFLKTFPDIFLQPYRAITEKQVVEKAILSHCHALANAGELVMVLGQPG 197
Query: 491 T 493
+
Sbjct: 198 S 198
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 503 ESGRFPPRLELLLSRECPP 447
E RF +LE LL +ECPP
Sbjct: 1126 EDVRFFQQLEFLLRKECPP 1144
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 119 PKPNSIANPSSVLFTSYANIVATRPAPATLTTQHPCPN*IARRGGATPPPNWSRHMAAIR 298
P+P S P + + T+ +N++ RP TT+ P R+GG + + + R
Sbjct: 306 PRPVSTLIPLTQVRTTASNVIKPRPQ----TTERPSTAQSFRKGGGFLKKTFKKLLR--R 359
Query: 299 ECLERAPSVRP 331
+R PS++P
Sbjct: 360 GSSKRKPSLQP 370
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 118 SQTQLHRQPFLSSFHILCEHCSHATGARYTYNTTPLP*LNRAP 246
S + ++ QPF +SF + + + TGA N P P +N P
Sbjct: 197 SASTINDQPFSNSFDLPSQVIADGTGAISDINGNPFP-MNSPP 238
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 423 PLNGTVTRWRTFPRE*QFEARREPS 497
P NG++ RWR+F R PS
Sbjct: 291 PRNGSIKRWRSFSRHSSATYSNSPS 315
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 133 HRQPFLSSFHILCEHCSH 186
H L + HILC++C H
Sbjct: 538 HAASKLENVHILCDYCKH 555
>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 236 IARRGGATPPPNWSRHMAAIRECLERA 316
I RGG P + H+AA+R+ LE+A
Sbjct: 243 IILRGGKKGPNYDAEHVAAVRKDLEKA 269
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 231 IKSRAGEEPRRPPTGPA 281
+KS + P PPTGPA
Sbjct: 209 VKSSPSQHPVNPPTGPA 225
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +2
Query: 329 PYGSGFRFLPALAEEYRVIQAYLAGASFADTAIKWYCYALEDIPARVAIRGEEGTVP 499
P G GFR L +EY S +A W Y+ +DIP+R E P
Sbjct: 317 PLG-GFRGESDLDDEYIYESLVNYSRSSLPSAENWNVYSKKDIPSRWHYSNNERIAP 372
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 449 PARNSTI*WQCQRRRLPRDKLGSPCTPLPTQA 354
P NS + Q ++ PR K +P TP+P A
Sbjct: 82 PGNNSPL--QTPQKSPPRQKHTAPATPIPVSA 111
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -2
Query: 337 PIWAHRGSPLQALPN--GRHVAGP 272
P+W+ SP LPN R++ GP
Sbjct: 112 PVWSEAFSPKSTLPNMVWRYIQGP 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,835
Number of Sequences: 5004
Number of extensions: 49574
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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