Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321G07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    36   0.023
Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.      30   1.2  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   2.0  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF003390-2|AAP31432.1|  341|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z72507-9|CAC35886.1|  282|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    27   8.1  
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    27   8.1  

>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 35.5 bits (78), Expect = 0.023
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
 Frame = +2

Query: 113 SNPKPNSIANPSSVLFTSYANIVATR-PAPATLTTQHPC-PN*IARRGGATPPPNWSRHM 286
           +N   +S+ NPS      Y N++ ++ P   T+ +  P  PN IA+     PPP  S  +
Sbjct: 205 ANGDHSSVLNPSG----QYKNVLPSKKPVQQTINSAQPAAPNPIAQYKSKMPPPPISNPV 260

Query: 287 AAIRECL-ERAPSVRPYGSGFRFLPALAEEYRVIQAYLAGAS--FADTAIKWYCYALEDI 457
           A  R  + ++ P++ P  +    L  +A +   IQ  +   S   A+T +  +   +  I
Sbjct: 261 ARYRSMISQQMPTILPSSAAIGQLQNIARQ-STIQKNMPSCSDDVANTLVSSFMPEIGSI 319

Query: 458 PARVAIRGEEGT 493
               A  G+ GT
Sbjct: 320 LQPGAHLGDNGT 331


>Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical
           protein C23H4.1 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 76  QIAHRAACGRGTPGLIRRDGEDG 8
           Q   +  CG   PG+I  DGEDG
Sbjct: 371 QAKQKIICGEDAPGIIESDGEDG 393


>AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 76  QIAHRAACGRGTPGLIRRDGEDG 8
           Q   +  CG   PG+I  DGEDG
Sbjct: 371 QAKQKIICGEDAPGIIESDGEDG 393


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 20  IPTDKPRGAPTTGCTVGNLESTRYMDLELTVSNPKPNSIANPSSVLFTSYANIVATRPAP 199
           IP   P  AP++  + G LES   +    TV+N    S++N    L T+ ++ +++   P
Sbjct: 428 IPDPIPEEAPSSSKSFGALESVNSLSPAKTVTNRNSRSLSNDE--LRTNKSDKLSSSVDP 485

Query: 200 ATLTTQ 217
            TL  +
Sbjct: 486 ITLDVE 491


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 20  IPTDKPRGAPTTGCTVGNLESTRYMDLELTVSNPKPNSIANPSSVLFTSYANIVATRPAP 199
           IP   P  AP++  + G LES   +    TV+N    S++N    L T+ ++ +++   P
Sbjct: 428 IPDPIPEEAPSSSKSFGALESVNSLSPAKTVTNRNSRSLSNDE--LRTNKSDKLSSSVDP 485

Query: 200 ATLTTQ 217
            TL  +
Sbjct: 486 ITLDVE 491


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +2

Query: 17  SIPTDKPRGAPTTGCTVGNLESTRYMDLELTVSNPKPNSIANPSSVLFTSYANIVATRPA 196
           SIPT  P  AP+T  +V  +ES   +   + +S+ + +S A   S L    AN V     
Sbjct: 161 SIPTTSPDTAPSTSSSVETVESVTEV---VAISSAEASSDAPARSPLKKKVANSVKPVVL 217

Query: 197 PATLTTQH 220
           P+  +T++
Sbjct: 218 PSRKSTRN 225


>AF003390-2|AAP31432.1|  341|Caenorhabditis elegans Hypothetical
           protein R155.1b protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 140 WRWSWVWDWRRLAL 99
           WRWSWV  W RL +
Sbjct: 113 WRWSWVTLWFRLTM 126


>AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical
           protein R155.1a protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 140 WRWSWVWDWRRLAL 99
           WRWSWV  W RL +
Sbjct: 245 WRWSWVTLWFRLTM 258


>Z72507-9|CAC35886.1|  282|Caenorhabditis elegans Hypothetical
           protein F17C11.11 protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 200 RAPVAWLQCSHKM*KELRKGWRWSWVWDWRRL 105
           RAP  ++    K  K    GW W  V  WRR+
Sbjct: 185 RAPKNFVSILQKEYKASNHGWEWPHVGYWRRV 216


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 131  SIANPSSVLFTSYANIVATRPAPATLTTQHP 223
            S + PS+ L ++  NI +T   P T TTQ P
Sbjct: 923  SQSTPSATLTSTTENIPSTSKIPETSTTQRP 953


>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = -1

Query: 518 TGPPLESGRFPPRLELLLSRECPPAR--NSTI*WQCQRRRLPRDKLGSPCTPLPTQAEI* 345
           TGPP+  G  PP L L    + PP     S+I    +   LP  ++      + T +   
Sbjct: 241 TGPPIYPGLGPPALPLSPMPQGPPPNIPPSSIYSMPRANDLPPTEMAPTLPQISTSSNGA 300

Query: 344 SLTHMGAQREPSPSTP*WPP 285
           S +   A   PS   P  PP
Sbjct: 301 SPSVSPASTSPSGPAPSIPP 320


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = -1

Query: 518 TGPPLESGRFPPRLELLLSRECPPAR--NSTI*WQCQRRRLPRDKLGSPCTPLPTQAEI* 345
           TGPP+  G  PP L L    + PP     S+I    +   LP  ++      + T +   
Sbjct: 241 TGPPIYPGLGPPALPLSPMPQGPPPNIPPSSIYSMPRANDLPPTEMAPTLPQISTSSNGA 300

Query: 344 SLTHMGAQREPSPSTP*WPP 285
           S +   A   PS   P  PP
Sbjct: 301 SPSVSPASTSPSGPAPSIPP 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,730,815
Number of Sequences: 27780
Number of extensions: 320160
Number of successful extensions: 908
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)