Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321G06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 184 9e-48
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 182 4e-47
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 27 1.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.7
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 27 1.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.2
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 3.9
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.2
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.8
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.0
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 9.0
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 184 bits (447), Expect = 9e-48
Identities = 90/159 (56%), Positives = 115/159 (72%)
Frame = +2
Query: 2 VKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 181
VKGPRGVLK+N + + ++++ +K W GS+K A +RT S + NMI GVT+GF
Sbjct: 28 VKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGF 86
Query: 182 QYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEG 361
+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KDE+IIEG
Sbjct: 87 RYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEG 146
Query: 362 NSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 478
NSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 147 NSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 182 bits (442), Expect = 4e-47
Identities = 88/159 (55%), Positives = 115/159 (72%)
Frame = +2
Query: 2 VKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGF 181
V GPRG LK+N +H+ ++++ +K W GS+K A +R+V S + NMI GVT+GF
Sbjct: 28 VTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGF 86
Query: 182 QYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEG 361
+YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KDE+I+EG
Sbjct: 87 RYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEG 146
Query: 362 NSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 478
NSLE+VS SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 147 NSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 508 YLMFLYVI*HNSCFLRYIKTIQELSDILILD 416
Y F++ + H S L Y KT++E++ + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 323 NSPKQKDELIIEGNSLEDVSSSAALIQQS 409
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +2
Query: 368 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 475
+ D+S+SA + T + N+++ K +GL+++ +T+
Sbjct: 78 MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 35 FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 172
F H +VD+ + L + E WF + T+CS + N++ VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 3.9
Identities = 6/23 (26%), Positives = 16/23 (69%)
Frame = -2
Query: 328 RVNDSHTRCHLYPSDVFLPQEVT 260
++N++++ CH YP + +P ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 120 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 10
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 130 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGP 8
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 314 TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 424
+V+N K EL +EG L+ V ++ ++ T+ +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 387 ELETSSKELPSMINSSFCLGELTTVTPGAI 298
EL TS+ PS S CL E+ T+ PG +
Sbjct: 654 ELLTSTFLSPSA-ESQVCLAEIKTIRPGLV 682
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,833
Number of Sequences: 5004
Number of extensions: 42811
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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