Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321G03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.2  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   3.9  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   3.9  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   5.2  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    25   5.2  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   6.8  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   6.8  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 418 TTVPRHFCVPPNFANI 371
           TT P+H+CV PN   I
Sbjct: 39  TTAPKHYCVRPNSGKI 54


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 370 IYSQNLAAHKSAAEQWLRIIDLENDLPNK 456
           ++S+ +   +SAAE  L++ + ENDL  K
Sbjct: 70  LFSERIPESQSAAEPVLKVENSENDLDEK 98


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 8   SRILTCVFSTIDTKIIYGANLYYRI 82
           +R+L  +    D K+IYG +L YRI
Sbjct: 142 NRMLKSIRDMTDDKVIYGFSLSYRI 166


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 239 PTHCINSLSKNFNIRNNLKYTIIFFCGFNI 328
           P H + + S N N  NN + TI   C FN+
Sbjct: 114 PLHDLQTFSSNLNHSNNRRQTI---CNFNM 140


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 379 QNLAAHKSAAEQWLRIIDLEND 444
           +NL A  ++AE W RI  L++D
Sbjct: 25  ENLPARYASAETWKRIYSLQHD 46


>SPAC23A1.04c |mnl1||alpha mannosidase-like
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 1  IALAHTNLRLFHH*YKNYL 57
          + L  T+ RLF+H Y NY+
Sbjct: 33 VELRETSRRLFYHGYNNYM 51


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 352 FKMNIIIYSQNLAAHKSAAEQWLRIIDLENDLPNKNSQL 468
           F +  I+YS  L   +S  E + R++DL   L  K + L
Sbjct: 107 FGLQSIVYSGILTHKESTIEDFQRVVDLLLQLSGKKNWL 145


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 253 YAVCW*VNNFYLFFLYAANVSLNMCRNKK 167
           + VC+ V  F +  +YA NV  N  R++K
Sbjct: 441 FVVCYCVAIFIIIAIYAVNVRENRRRDEK 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,431
Number of Sequences: 5004
Number of extensions: 42236
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)