Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321G03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0659 + 4829496-4829596,4830033-4830083,4832527-4834237           27   6.9  
03_01_0296 + 2284385-2285629,2287632-2288594                           27   6.9  

>03_01_0659 + 4829496-4829596,4830033-4830083,4832527-4834237
          Length = 620

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 116 LRDILSSFINHKFYNINWRHK*FLYQWWKRRKLVCASA 3
           ++ +L S+  H +Y +  R    LY  WK RKLV +SA
Sbjct: 584 IKKLLDSY--HSYYKLEERDG-ALYLGWKNRKLVVSSA 618


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 293 KYTIIFFCGFNIYSCVIF-FLLK*TLLYIRKIWRHTKVPRNS 415
           KY I+F  GF + S V+F   L  +L  I     H ++PR S
Sbjct: 334 KYPILFSYGFPVVSVVLFAATLGVSLWIISSAIHHYRIPRKS 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,690
Number of Sequences: 37544
Number of extensions: 208325
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)