Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321G03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   4.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   5.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   5.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.8  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 86  NSLSNNYNYNNN 97


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 319 NSLSNNYNYNNN 330


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 254 NSLSKNFNIRNN 289
           NSLS N+N  NN
Sbjct: 319 NSLSNNYNYNNN 330


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 251 INSLSKNFNIRNN 289
           I+SLS N+N  NN
Sbjct: 82  ISSLSNNYNYNNN 94


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 251 INSLSKNFNIRNN 289
           I+SLS N+N  NN
Sbjct: 82  ISSLSNNYNYNNN 94


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 251 INSLSKNFNIRNN 289
           I+SLS N+N  NN
Sbjct: 82  ISSLSNNYNYNNN 94


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 251 INSLSKNFNIRNN 289
           I+SLS N+N  NN
Sbjct: 315 ISSLSNNYNYNNN 327


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 317 GFNIYSCVIFFLL 355
           G +I+SC+ FF+L
Sbjct: 372 GSSIWSCLFFFML 384


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 317 GFNIYSCVIFFLL 355
           G +I+SC+ FF+L
Sbjct: 425 GSSIWSCLFFFML 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,003
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)