Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321G02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 27 1.7
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 3.0
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 26 3.0
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 26 3.9
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 25 5.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 5.2
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 6.8
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 6.8
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 9.0
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 173 VVDHPQIALAAITSYKKQIEISEFINFLLEALERNAVWLNTLVGNQNNFKCALMVGAG 346
V DH I A +T YK + + + +N L L+ + ++ N L+ GAG
Sbjct: 296 VEDHSHIVFAQLTHYKNKKDEKKALNLLAWILKLYSYMSLFILFGSNYSDIVLLFGAG 353
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 284 IRHYAPVPLKGSL*IHLFRSVFCRMLLQPRLFVGGQLP 171
+ HY P L GSL + F + CR + + G +P
Sbjct: 671 LHHYLPAHLAGSLLVGAFIQLACRKSFRSPVSAGVPIP 708
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 257 LEALERNAVWLNTLVGNQN 313
+E L+ + +WLNT +G +N
Sbjct: 205 VEYLDHHCIWLNTCIGRRN 223
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 101 SKNSSGTVSLKKSSTKRPRELGEKVVDHPQIALAA 205
++ +S + + SST P+ EKVV P + L++
Sbjct: 52 NQRTSSLIKIHNSSTSFPKSRSEKVVYTPSLPLSS 86
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 319 EIVLVPN*SIQPYGITLQCL*KEV 248
EIVL PN I+P G +Q L +EV
Sbjct: 241 EIVLQPNSLIEPLGKIIQVLKREV 264
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 5.2
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -2
Query: 472 AKLQDCGHCYFVVIFRVFQLHF 407
++L++C C++ V+ RV++ F
Sbjct: 568 SRLRECSFCFYAVLARVYKEEF 589
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 335 VGAGPNRFQIQEIIYPAGNNNVKLEVELKDSEDHDKIAV 451
V A P+ ++++I YP NN++ + ++ ED AV
Sbjct: 751 VNAFPSYIRLEDIAYPFANNSMIAILGSEEMEDKCTAAV 789
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 338 GAGPNRFQIQEIIYPAGNNNVKLEVELKDSEDHDKIAVAAVLQLSNADITNLL 496
G P R I E G + V L D+E +K ++A + +N + NLL
Sbjct: 291 GEKPPRIVIYEASERLGGHIYTHMVPLSDNEVSEKSSLATTVNATNECMVNLL 343
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 236 SEFINFLLEALERNAVWLNTLVGNQNNFKCALMVGAGPNRFQIQE---IIYPAGNNNVKL 406
S+++ + +E LN ++ ++F C + PN+FQ E I+Y + N
Sbjct: 679 SDYLYIVGIDMETEQPTLNQILEVNDSFTCVSGIYDIPNKFQNSESRIIVYYSNNTLYLS 738
Query: 407 EVELKDSEDHDKIAVAA 457
E+ L K+ +AA
Sbjct: 739 ELWLPQRTFSSKLNLAA 755
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 344 GPNRFQIQEIIYPAG-NNNVKLEVELKDSEDHDKIAVAAVLQLSNAD 481
G N + +E+I N NV E + + D ++ AVA Q++ AD
Sbjct: 383 GNNESENEEVIEEDNLNRNVIAEAQNQVVADEERNAVARAAQIAEAD 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,541
Number of Sequences: 5004
Number of extensions: 43901
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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