Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321G02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84...    29   2.3  
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940...    27   6.9  

>07_01_0113 +
           840866-841574,841687-842210,842391-842840,843541-843699
          Length = 613

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 403 FYIVIPCWINDFLDLESIRASSN 335
           F+  +P WI DF DL+ +R S N
Sbjct: 328 FFGSLPAWIGDFRDLQILRLSHN 350


>01_06_1550 +
           38191957-38192054,38193084-38193284,38193456-38194090,
           38194398-38195419
          Length = 651

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 328 LNGWSWPESIPDPR 369
           ++GW W ++IPDPR
Sbjct: 102 VSGWIWDKTIPDPR 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,474,228
Number of Sequences: 37544
Number of extensions: 268113
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)