Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321G02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical pr...    33   0.094
Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U64859-3|AAC69093.2|  447|Caenorhabditis elegans Innexin protein...    27   8.1  
AF106579-7|AAC78199.2|  391|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical
           protein F57G4.8 protein.
          Length = 401

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 23/92 (25%), Positives = 42/92 (45%)
 Frame = +2

Query: 176 VDHPQIALAAITSYKKQIEISEFINFLLEALERNAVWLNTLVGNQNNFKCALMVGAGPNR 355
           +D     L+  T       +S FI  + E   R+A+ +  +   + +FK A ++   PN+
Sbjct: 278 MDDETYKLSKSTGIDNFFHLSHFIISVQEFTTRDAMKIKNIFMKEPSFKYAKILAEIPNQ 337

Query: 356 FQIQEIIYPAGNNNVKLEVELKDSEDHDKIAV 451
            +I  + YPA +    L   ++   D DK A+
Sbjct: 338 MEILRVFYPAYSE--PLPPGVRYETDGDKFAL 367


>Z83230-6|CAB05746.1|  336|Caenorhabditis elegans Hypothetical
           protein F56A8.6 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 128 LKKSSTKRPRELGEKVVDHPQIALAAI 208
           L++S    P EL + +V+HPQIA A +
Sbjct: 150 LQESLKNNPSELHKFLVEHPQIAYAVL 176


>Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical
           protein F48F7.2 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 386 GNNNVKLEVELKDSEDHDKIAVAAVL 463
           G+ NVK  VE K S    KI VAA+L
Sbjct: 248 GSANVKTAVEYKKSAMRKKICVAAIL 273


>U64859-3|AAC69093.2|  447|Caenorhabditis elegans Innexin protein 5
           protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 277 ITLQCL*KEVYEFTYFDLFFVG--CYCSQGYLWVVNYL 170
           I +  L ++VY F +F L FVG    CS  Y W V Y+
Sbjct: 274 IVINMLAEKVYVFFWFWLLFVGLLTVCSLAY-WAVIYM 310


>AF106579-7|AAC78199.2|  391|Caenorhabditis elegans Hypothetical
           protein F54E2.1 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
 Frame = +2

Query: 227 IEISEFINFLLEALERNAVWLNTLVGNQNNFKC------ALMVGAG-PNRFQIQEIIYPA 385
           I IS  + F   +L +  + LNTL+GN    K       +L V A   + F +  I    
Sbjct: 3   ISISLLLTFCKLSLAQQVIPLNTLIGNNFENKIDVTPPFSLYVSAQMDSDFNLNNIYVKT 62

Query: 386 GNNNVKLEVELKDSEDHDKIAVAAVLQLSNADI--TNL 493
            +N +K   +L+ S  H +    +  Q ++  +  TNL
Sbjct: 63  MDNQIKSLKDLRHSRQHAESGPISPFQATSQTLITTNL 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,771,286
Number of Sequences: 27780
Number of extensions: 241288
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)