Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321G01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868... 31 0.42
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 29 2.3
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 28 4.0
08_02_0162 + 13464698-13464974,13465719-13465837,13465920-134665... 28 4.0
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 5.2
07_03_0597 - 19853533-19853790,19853898-19853933,19854002-19854592 27 6.9
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 27 9.1
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 27 9.1
>05_03_0355 -
12885898-12886290,12886351-12886644,12886744-12886871,
12886952-12888482
Length = 781
Score = 31.5 bits (68), Expect = 0.42
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = +3
Query: 90 ISSAEKTSRRTSQAWKYFGILDEAKCLARCNLCLSVM-SFRTSVSNLMKHVKTKHPFAHS 266
+ S K + + + WK G L A+ + ++ +F +SN +K K P A
Sbjct: 161 VDSVAKRRKSSVKPWK--GPLPRARISQPLTIGDKLVEAFTAKLSNSVKFRKAWVPIATR 218
Query: 267 QMKKEIANSEKRSSYTGINNMLKEQKHETTDEDGIKKIFVSTDGKVYEIETEQGDEFSQ 443
Q + + E+ S G+ ++ T+E+ + IF ST G++ + +EF +
Sbjct: 219 QENEATLSRERDESCAGLREEDDKEVFLATEEERRELIFGSTTGQLETRQPRGVEEFGR 277
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Frame = +3
Query: 3 KIKMDRVHSVNSDEESDRTDFESDVENINISSAEKTS--RRTSQAWKYFGIL----DEAK 164
K K+D H EE D E + + K R W YF +++
Sbjct: 147 KRKIDETHVEQGHEELDAASLREHEEFTKVKNIAKIELGRYEIDTW-YFSPFPPEYNDSP 205
Query: 165 CLARCNLCLSVMSFRTSVSNLMKHVKTKHP 254
L C CL+ M + + MK KHP
Sbjct: 206 KLFFCEFCLNFMKRKEQLQRHMKKCDLKHP 235
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 220 DTDVRNDITLRQRLQRAKHLASSKI 146
D V NDITLR+ L H++S++I
Sbjct: 896 DATVLNDITLRKELAEVTHVSSAQI 920
>08_02_0162 +
13464698-13464974,13465719-13465837,13465920-13466579,
13466686-13466763,13466849-13466938,13467241-13467378,
13467730-13467738
Length = 456
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 252 PFAHSQMKKEIANSEKRSSYTGINNMLKEQKHETTDEDGIKKIFVSTDGKVYEIETEQGD 431
PF Q ++ ++ + K NN+ + E+T ED +K+IF + +GD
Sbjct: 201 PFVRKQERENVSGNPK------FNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGD 254
Query: 432 EFSQ-QGQINATNENEEIKSMMEQITG 509
S+ G +N N ++ ++ +E + G
Sbjct: 255 GKSRCFGFVNFENPDDAARA-VEDLNG 280
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.9 bits (59), Expect = 5.2
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Frame = +3
Query: 39 DEESDRTDFESDVENINISS------AEKTSRRTSQAWKYFGILD-EAKCLA-------- 173
D+E+ R + SDV N++ + E T R ++ K +++ E + L+
Sbjct: 226 DKEATRVELSSDVANLSSENENLKLLVETTEREAGESHKTITLMENEIRTLSVEKQVTEK 285
Query: 174 -RCNLCLSVMSFRT---SVSNLMKHVKTKHPFAHSQMKK-EIANSEKRSSYTGINNMLKE 338
R +L +S++ +SN ++ K F SQ++K ++A E ++ + I + E
Sbjct: 286 ERDDLKISIVDLENMNGDLSNQLQETNEKCTFLSSQLEKAQLAEKEVQTLLSEIEKIKNE 345
Query: 339 QKHETTDEDGIK 374
+ + D +K
Sbjct: 346 NLMLSRENDNLK 357
>07_03_0597 - 19853533-19853790,19853898-19853933,19854002-19854592
Length = 294
Score = 27.5 bits (58), Expect = 6.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 318 CPCTNCASHYW 286
CPC NC + YW
Sbjct: 38 CPCKNCGNRYW 48
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -2
Query: 328 ILLMPVYE-LRFSLLAISFFIWLCANGCFVLTCFIKFDTDVRNDITLRQRLQRAKHLASS 152
+ ++PVYE +S++AIS F L A + TCF +R D R + R H SS
Sbjct: 136 VWILPVYENSAWSIMAIS-FTSLLAMAAVLATCFFVRRHQIRRD-RGRIPVTREFHGMSS 193
Query: 151 KIPK 140
++ K
Sbjct: 194 QLVK 197
>04_03_0741 + 19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +3
Query: 213 SVSNLMKHVKTKHPFAHSQMKKEIANSEKRSSYTGINNMLKEQKHETTDEDGIKKIFVST 392
S NL++H K + +K+ T ++K+Q + E+GIK++ + +
Sbjct: 863 SPKNLLRHKDCKSNLSEFDDLAGHPGFDKQG--TRFKRLIKDQNNHKDLEEGIKRLVLCS 920
Query: 393 DGKVYEIETEQ 425
YE++ E+
Sbjct: 921 GKVYYELDEER 931
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,995
Number of Sequences: 37544
Number of extensions: 241570
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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