Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321F12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   0.73 
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    28   0.97 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.2  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   2.2  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   3.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   6.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   6.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   9.0  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -1

Query: 269  IVKSIKRNFSAILQPKEAGLELSCR--ELWCKVERNLRVFPFLEVAQSTVNTGVNSDLVH 96
            I+ ++K  F +I   K   L+ + R   LW K   N  V   L V  STVN  +  D++ 
Sbjct: 1684 IIPAVKGFFKSIALSK-GNLQDTLRLLNLWFKFGNNSNVINTLNVGISTVNIDIWLDVIP 1742

Query: 95   STRAGVH 75
               A +H
Sbjct: 1743 QLIARIH 1749


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 93  TVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 254
           T   +   PC+++ L  +     A+   +FT   +TT+   G  GL+ GA I F
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 397 KTMRARCAATERMSGWFSKTAHILYSK 477
           KTM AR  ATE  S +FS +A  L SK
Sbjct: 505 KTMLARAVATESRSVFFSISASSLTSK 531


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 397 KTMRARCAATERMSGWFSKTAHILYSKH 480
           KTM AR  ATE  + +FS +A  L SK+
Sbjct: 425 KTMLARAVATEAKATFFSISASSLTSKY 452


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 245 FSAILQPKEAGLELSCRELWCKVERNLRVFPFLEVAQSTVNTGVN 111
           F  +LQ K AG  +S  +LW +      V P    A +T ++  N
Sbjct: 220 FEQVLQKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSSVTN 264


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 127 LTQGSIRTSFTVHALASTSRHSLVVTTLNSARPQPRNAANNS 2
           L   ++ T+    A   TS HS+  T + S  P P  + N++
Sbjct: 39  LPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNST 80


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 40  NSTSSPQGYVGKWTPA 87
           NS+S+PQGY   WTP+
Sbjct: 113 NSSSNPQGYA--WTPS 126


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 269 IVKSIKRNFSAILQPKEAGLELSCRELWCKVERNLRVFPFLEVAQSTVN 123
           I K+IK N   I+  +E   ELS   +W K+++++++    + + S V+
Sbjct: 723 IYKAIKEN--EIIVAEEHDTELSFLYIWSKLQQSVKITEPFKRSSSNVH 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,492
Number of Sequences: 5004
Number of extensions: 44841
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)