Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321F12f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK222474-1|BAD96194.1| 151|Homo sapiens Niemann-Pick disease, t... 55 1e-07
X67698-1|CAA47928.1| 151|Homo sapiens protein ( H.sapiens tissu... 55 2e-07
BC002532-1|AAH02532.1| 151|Homo sapiens Niemann-Pick disease, t... 55 2e-07
BC069632-1|AAH69632.1| 549|Homo sapiens tigger transposable ele... 33 0.61
BC069623-1|AAH69623.1| 549|Homo sapiens tigger transposable ele... 33 0.61
AF251050-1|AAK34940.1| 511|Homo sapiens jerky protein. 33 0.61
BX537412-1|CAD97654.1| 612|Homo sapiens hypothetical protein pr... 29 9.9
BT007130-1|AAP35794.1| 612|Homo sapiens dynein, cytoplasmic, in... 29 9.9
BC109375-1|AAI09376.1| 612|Homo sapiens DYNC1I2 protein protein. 29 9.9
BC091498-1|AAH91498.1| 612|Homo sapiens DYNC1I2 protein protein. 29 9.9
BC022540-1|AAH22540.1| 625|Homo sapiens DYNC1I1 protein protein. 29 9.9
BC015038-1|AAH15038.1| 612|Homo sapiens DYNC1I2 protein protein. 29 9.9
AL137519-1|CAB70785.1| 429|Homo sapiens hypothetical protein pr... 29 9.9
AK055491-1|BAB70932.1| 638|Homo sapiens protein ( Homo sapiens ... 29 9.9
AK026574-1|BAB15502.1| 321|Homo sapiens protein ( Homo sapiens ... 29 9.9
AF250307-1|AAK37426.1| 612|Homo sapiens cytoplasmic dynein inte... 29 9.9
AC068039-1|AAY24133.1| 562|Homo sapiens unknown protein. 29 9.9
AB209014-1|BAD92251.1| 575|Homo sapiens dynein, cytoplasmic, in... 29 9.9
>AK222474-1|BAD96194.1| 151|Homo sapiens Niemann-Pick disease, type
C2 precursor variant protein.
Length = 151
Score = 55.2 bits (127), Expect = 1e-07
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Frame = +3
Query: 51 VTTRLCREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGL 230
V R C VD + EV + PC ++ C L KG++ V+ FT + K + G+
Sbjct: 22 VQFRDCGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNVQSKSSKAVVHGI 77
Query: 231 KNGAEIPFDALYNADAC-TLTSCPTEAGKTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNE 407
G +PF + D C + +CP + KT + L + + P+ +W+L ++ N+
Sbjct: 78 LMGVPVPF-PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQ 136
Query: 408 SQMCCYRTNVRLV 446
S + C+ V++V
Sbjct: 137 S-LFCWEIPVQIV 148
>X67698-1|CAA47928.1| 151|Homo sapiens protein ( H.sapiens tissue
specific mRNA. ).
Length = 151
Score = 54.8 bits (126), Expect = 2e-07
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Frame = +3
Query: 66 CREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAE 245
C VD + EV + PC ++ C L KG++ V+ FT + K + G+ G
Sbjct: 27 CGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVP 82
Query: 246 IPFDALYNADAC-TLTSCPTEAGKTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNESQMCC 422
+PF + D C + +CP + KT + L + + P+ +W+L ++ N+S + C
Sbjct: 83 VPF-PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQS-LFC 140
Query: 423 YRTNVRLV 446
+ V++V
Sbjct: 141 WEIPVQIV 148
>BC002532-1|AAH02532.1| 151|Homo sapiens Niemann-Pick disease, type
C2 protein.
Length = 151
Score = 54.8 bits (126), Expect = 2e-07
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Frame = +3
Query: 66 CREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAE 245
C VD + EV + PC ++ C L KG++ V+ FT + K + G+ G
Sbjct: 27 CGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVP 82
Query: 246 IPFDALYNADAC-TLTSCPTEAGKTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNESQMCC 422
+PF + D C + +CP + KT + L + + P+ +W+L ++ N+S + C
Sbjct: 83 VPF-PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQS-LFC 140
Query: 423 YRTNVRLV 446
+ V++V
Sbjct: 141 WEIPVQIV 148
>BC069632-1|AAH69632.1| 549|Homo sapiens tigger transposable
element derived 7 protein.
Length = 549
Score = 33.1 bits (72), Expect = 0.61
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -1
Query: 248 NFSAILQPKEAGLELSCREL--WCKVERNLRVFPFLEVAQSTVNTGVNSDLVHSTRAGV 78
N S ++QP G+ LSC+ L W ++E +L +F + Q + GV+ +++ ++ +
Sbjct: 322 NTSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380
>BC069623-1|AAH69623.1| 549|Homo sapiens tigger transposable
element derived 7 protein.
Length = 549
Score = 33.1 bits (72), Expect = 0.61
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -1
Query: 248 NFSAILQPKEAGLELSCREL--WCKVERNLRVFPFLEVAQSTVNTGVNSDLVHSTRAGV 78
N S ++QP G+ LSC+ L W ++E +L +F + Q + GV+ +++ ++ +
Sbjct: 322 NTSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380
>AF251050-1|AAK34940.1| 511|Homo sapiens jerky protein.
Length = 511
Score = 33.1 bits (72), Expect = 0.61
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -1
Query: 248 NFSAILQPKEAGLELSCREL--WCKVERNLRVFPFLEVAQSTVNTGVNSDLVHSTRAGV 78
N S ++QP G+ LSC+ L W ++E +L +F + Q + GV+ +++ ++ +
Sbjct: 322 NSSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380
>BX537412-1|CAD97654.1| 612|Homo sapiens hypothetical protein
protein.
Length = 612
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 475 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 532
Query: 351 KLPTGN 368
++PT +
Sbjct: 533 EVPTAS 538
>BT007130-1|AAP35794.1| 612|Homo sapiens dynein, cytoplasmic,
intermediate polypeptide 2 protein.
Length = 612
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 475 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 532
Query: 351 KLPTGN 368
++PT +
Sbjct: 533 EVPTAS 538
>BC109375-1|AAI09376.1| 612|Homo sapiens DYNC1I2 protein protein.
Length = 612
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 475 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 532
Query: 351 KLPTGN 368
++PT +
Sbjct: 533 EVPTAS 538
>BC091498-1|AAH91498.1| 612|Homo sapiens DYNC1I2 protein protein.
Length = 612
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 475 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 532
Query: 351 KLPTGN 368
++PT +
Sbjct: 533 EVPTAS 538
>BC022540-1|AAH22540.1| 625|Homo sapiens DYNC1I1 protein protein.
Length = 625
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 489 SFDWTVKLCTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDL--WNLNNDT 546
Query: 351 KLPTGN 368
++PT +
Sbjct: 547 EVPTAS 552
>BC015038-1|AAH15038.1| 612|Homo sapiens DYNC1I2 protein protein.
Length = 612
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 475 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 532
Query: 351 KLPTGN 368
++PT +
Sbjct: 533 EVPTAS 538
>AL137519-1|CAB70785.1| 429|Homo sapiens hypothetical protein
protein.
Length = 429
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 292 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 349
Query: 351 KLPTGN 368
++PT +
Sbjct: 350 EVPTAS 355
>AK055491-1|BAB70932.1| 638|Homo sapiens protein ( Homo sapiens
cDNA FLJ30929 fis, clone FEBRA2006808, highly similar to
DYNEIN INTERMEDIATE CHAIN 2, CYTOSOLIC. ).
Length = 638
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 501 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 558
Query: 351 KLPTGN 368
++PT +
Sbjct: 559 EVPTAS 564
>AK026574-1|BAB15502.1| 321|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22921 fis, clone KAT06711. ).
Length = 321
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 184 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 241
Query: 351 KLPTGN 368
++PT +
Sbjct: 242 EVPTAS 247
>AF250307-1|AAK37426.1| 612|Homo sapiens cytoplasmic dynein
intermediate chain 2C protein.
Length = 612
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 475 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 532
Query: 351 KLPTGN 368
++PT +
Sbjct: 533 EVPTAS 538
>AC068039-1|AAY24133.1| 562|Homo sapiens unknown protein.
Length = 562
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 425 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 482
Query: 351 KLPTGN 368
++PT +
Sbjct: 483 EVPTAS 488
>AB209014-1|BAD92251.1| 575|Homo sapiens dynein, cytoplasmic,
intermediate polypeptide 2 variant protein.
Length = 575
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +3
Query: 171 SFDFTPQFSTTKLKTGLFGLKNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGK 350
SFD+T + TTK L+ ++ A+ +D +++ L +C G+ ++L+
Sbjct: 438 SFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGMGRLDL--WNLNNDT 495
Query: 351 KLPTGN 368
++PT +
Sbjct: 496 EVPTAS 501
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,722,272
Number of Sequences: 237096
Number of extensions: 1565874
Number of successful extensions: 3197
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3194
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -