Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321F12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologu... 60 9e-10
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 30 1.2
Z77656-5|CAH04702.1| 308|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 28 4.7
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 4.7
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 4.7
Z93373-3|CAD54120.1| 449|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z83245-12|CAD54180.1| 449|Caenorhabditis elegans Hypothetical p... 27 6.2
>AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologue
protein 1 protein.
Length = 154
Score = 60.1 bits (139), Expect = 9e-10
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Frame = +3
Query: 39 EFNVVTTRLCREVDASACTVNEVRIDPCV-----NSRLCHLKKGKNAKVSFDFTPQFSTT 203
EF + ++C+ S TV++V+ D C ++C KKG + F P T
Sbjct: 16 EFIEIGYKVCK----SDGTVSQVKADGCELTVKDGKKVCLFKKGSRPIIQIAFKPSKDTD 71
Query: 204 KLKTGLFGLKNGAEIPFDALYNADACTL-TSCPTEAGKTQTLDFSLHIGKKLPTGN-FEF 377
KLKT + G+ + N+DACT CP AG+ Q + S+ I + P G +
Sbjct: 72 KLKTSVRAKVGGSAMVDFPQTNSDACTYGVKCPVSAGENQIFEQSISITENHPAGEVIQV 131
Query: 378 KWKLWNEDNESQMC 419
W+L D+ ++C
Sbjct: 132 NWQLTRPDSGKEVC 145
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 112 LTPVLTVDCATSRKGKTRRFLSTLH 186
LTP++T C+ KGK ++ LS+ H
Sbjct: 31 LTPIITAQCSKKPKGKKKKKLSSSH 55
>Z77656-5|CAH04702.1| 308|Caenorhabditis elegans Hypothetical
protein F07B10.6 protein.
Length = 308
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 360 TGNFEFKWKLWNEDNESQMCCY 425
+G+F F ++L+N+D SQ C+
Sbjct: 59 SGHFVFNYQLFNDDKSSQAACF 80
>Z95559-9|CAI46625.1| 510|Caenorhabditis elegans Hypothetical
protein Y41E3.18 protein.
Length = 510
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 203 SCRELWCKVERNLRVFPFLE 144
+CRE+W +V R ++VF FL+
Sbjct: 474 NCREVWRRVRRFVKVFVFLK 493
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = -1
Query: 215 GLELSCRELWCK-----VERNLRVFPFLEVAQSTVNTGV 114
G+ SC + WCK + + +F LE + T NTGV
Sbjct: 54 GIYFSCCDFWCKPYVHMSKNSFAIFNVLEETKLTQNTGV 92
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 90 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 188
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 90 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 188
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 90 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 188
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
>Z93373-3|CAD54120.1| 449|Caenorhabditis elegans Hypothetical
protein ZK131.11b protein.
Length = 449
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 TRSELTP--VLTVDCATSRKGKTRRFLSTLHHNSLQLS 207
T S L P +L+VD SR G++ LS +HH QLS
Sbjct: 74 TSSTLGPSTLLSVDKRHSRLGESSPNLSRIHHTHTQLS 111
>Z83245-12|CAD54180.1| 449|Caenorhabditis elegans Hypothetical
protein ZK131.11b protein.
Length = 449
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 100 TRSELTP--VLTVDCATSRKGKTRRFLSTLHHNSLQLS 207
T S L P +L+VD SR G++ LS +HH QLS
Sbjct: 74 TSSTLGPSTLLSVDKRHSRLGESSPNLSRIHHTHTQLS 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,414,333
Number of Sequences: 27780
Number of extensions: 256011
Number of successful extensions: 639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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