Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321F09f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1EQ25 Cluster: Beta subunit isoform c; n=1; Entamoeba ...    33   4.0  
UniRef50_Q5I231 Cluster: Putative uncharacterized protein plu418...    32   9.2  

>UniRef50_Q1EQ25 Cluster: Beta subunit isoform c; n=1; Entamoeba
           histolytica|Rep: Beta subunit isoform c - Entamoeba
           histolytica
          Length = 678

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +3

Query: 183 PVLRP*IKHYANIYVLCSSFKTCISF*-KVTS----ITRCIEKWDTECLSVSISVISALF 347
           P+L   I++  N+   C+    C  F  K+T+    I +CIE++  ECL V +++++A  
Sbjct: 460 PLLLNNIENLENVEAKCALIYLCGEFVTKITNAKEFIAKCIERYTDECLEVRLTLLTACG 519

Query: 348 NFFLE 362
             + E
Sbjct: 520 KIYCE 524


>UniRef50_Q5I231 Cluster: Putative uncharacterized protein plu4183;
           n=1; Haemophilus parasuis|Rep: Putative uncharacterized
           protein plu4183 - Haemophilus parasuis
          Length = 201

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -2

Query: 520 NFDQNNMFLPFCYSTDRYKYSCSIEYYRLLHRH**SMRISFYYTKIAIIFVLHSRKKLN 344
           NFD N+  LPF ++ DR     S      +H+    M IS  +TKI + F+L   K  N
Sbjct: 121 NFDSNSFVLPFTFNLDRINKPLSFGVG--IHKC-IGMGISLDFTKIFVEFILEKYKLKN 176


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,158,595
Number of Sequences: 1657284
Number of extensions: 7419082
Number of successful extensions: 15883
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15879
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)