Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   1.7  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   6.8  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   6.8  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   9.0  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 416 IYENIILLYKNCYNICT 366
           +Y+N I+L+  CY +CT
Sbjct: 562 VYDNEIVLFDTCYMVCT 578


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -3

Query: 126  NIPNLSKKYNNYFKFIDFNY 67
            +IP ++KKYN  +++I +N+
Sbjct: 1203 SIPAIAKKYNFEYEYITYNW 1222


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 513 IKTTCFCHFAIPQTDINI 460
           I T CFC F IP   +NI
Sbjct: 67  IVTACFCFFLIPLLLVNI 84


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = -2

Query: 316 DKHSVSHFSMQRV-IDVTF*---NEIQVLKDEHRT*MFA*CFIYGRRT 185
           D + +SH S+Q V + V +    +EIQ+  D+ +T  +  C++Y R T
Sbjct: 728 DFYLISHPSLQGVSVPVHYTVLHDEIQMPPDQFQTLCYNLCYVYARAT 775


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 180 TRSNDWGPALNFRILDTLNIPNL 112
           +R +  G  L F++LDTLN+ N+
Sbjct: 803 SRKHSEGIPLAFKLLDTLNLQNV 825


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 312 LSVSISVISALFNFFLEC 365
           L   +S++S++ NFFL C
Sbjct: 329 LDCIVSILSSILNFFLRC 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,594
Number of Sequences: 5004
Number of extensions: 36046
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)