Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321F08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 29 0.56
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 28 0.97
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 2.2
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 6.8
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 25 6.8
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 6.8
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 25 9.0
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 9.0
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 9.0
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 25 9.0
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = -3
Query: 168 PDYFPRTKQTVQMLLRDLDTMEELALVT*LRKIAVVSFKCYVKCSKI 28
P Y + +++ ++R+ D + + L+ L+++ V + C+VK +KI
Sbjct: 911 PHYAEKILLSLREIIREEDQLSRVTLLEYLKQLHPVEWDCFVKDTKI 957
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = -3
Query: 168 PDYFPRTKQTVQMLLRDLDTMEELALVT*LRKIAVVSFKCYVKCSKI 28
P Y + +++ ++R+ D + + L+ L+++ +KC+V+ +KI
Sbjct: 883 PHYGEKILLSLKEIIREQDKLSRVTLLEYLKQLHANEWKCFVRDTKI 929
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 382 FRVGKAGEIRRRTRVGEGATTRGGHRQ*RVPGTTSAAHHVLPGAARRQT 236
F +G+ GE+ R VG GG R+ +P + + +PG + T
Sbjct: 303 FILGR-GEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPGIPKNST 350
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.0 bits (52), Expect = 6.8
Identities = 24/96 (25%), Positives = 41/96 (42%)
Frame = -3
Query: 462 SQAAPTAMLGGMLSSPGGTSLDLPISTSELEKLAKSVEEQELVRAPQPEAAIDNNVCRER 283
S + PT + G +L + +EKL EE+ ++R + E D V E
Sbjct: 659 SLSIPTDFQKEASPNKGAAALSSKVEPEVVEKLLDEEEEEMIIRMAEEEKEYDRFV-SEL 717
Query: 282 LLRHITCCQALLDARLDSIEAQVAELESQDPSFEDD 175
RH T + ++ E ++ EL++Q S + D
Sbjct: 718 NQRHET-----EEWNQEAFEKRLKELKNQKRSEKRD 748
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 291 RERLLRHITCCQALLDARLDSIEAQVAELESQDPS 187
+ RLLR I CC ++ D + +E + +L +PS
Sbjct: 53 KNRLLRSIFCCMSIDDE--EELETDMYDLPIVEPS 85
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 330 APQPEAAIDNNVCRERLLRHITC 262
+P + ++D N RLL H+ C
Sbjct: 896 SPHTQISLDKNPLNRRLLEHVCC 918
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -3
Query: 273 HITCCQALLDARLDSIEAQVAELESQDPSFED---DETPDYFPRT 148
H+ + L A+ ++E+ ELE + PS+E D P Y+ T
Sbjct: 96 HVDSVFSNLSAK-PTVESNTEELEEEPPSYEQAAADTAPPYWDTT 139
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 406 FPGLAYKHFRVGKAGEIRRRTRVGEGATTRGG 311
FPG A G GEIR VG+G+ ++ G
Sbjct: 310 FPGAA-----TGSGGEIRDEGAVGQGSLSKAG 336
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 252 LLDARLDSIEAQVAELESQDPSFEDD 175
LL ARL S+E L S P DD
Sbjct: 40 LLSARLASVEVDPETLPSNSPETNDD 65
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = -3
Query: 258 QALLDARLDSIEAQVAELESQDPSFEDDETPDYFPRTKQTVQMLLRDLDTMEELALVT*L 79
Q L+D L IE V FED T F Q Q + + M+ L +
Sbjct: 88 QKLIDDLLHVIEGLVLIHPKSQTLFEDKATLRLFIHLLQPSQPSMLQVAAMKTLVCIMAD 147
Query: 78 RKIAVVSFKCYVKCSKIGLLFK 13
R +A+ F+ +I ++FK
Sbjct: 148 RPLAIRLFEQINGLQQICVVFK 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,404
Number of Sequences: 5004
Number of extensions: 40849
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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