Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321F08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0374 + 9538478-9540385 33 0.11
07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100... 31 0.42
08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237 29 2.3
04_04_1164 - 31413577-31414080,31414435-31414647 29 2.3
06_01_0008 + 141405-142421 28 4.0
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 28 4.0
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 27 6.9
03_02_0856 - 11815684-11815701,11816019-11816194,11817878-11818670 27 9.1
>02_02_0374 + 9538478-9540385
Length = 635
Score = 33.5 bits (73), Expect = 0.11
Identities = 28/104 (26%), Positives = 46/104 (44%)
Frame = -3
Query: 468 RDSQAAPTAMLGGMLSSPGGTSLDLPISTSELEKLAKSVEEQELVRAPQPEAAIDNNVCR 289
+DS M SSP T DL + +E+ + + ELV A + A+ ++
Sbjct: 114 KDSSKVTPTMCSMKCSSPD-TKPDLTM-VAEVTYASAATASMELVTAQETIGAMYSDTSD 171
Query: 288 ERLLRHITCCQALLDARLDSIEAQVAELESQDPSFEDDETPDYF 157
+ H C +LDA D+ +A V ++ +F+DD T F
Sbjct: 172 HSKVMHTKCLTVVLDAIGDTGQAMVV-FQTWTDAFKDDPTSVQF 214
>07_03_1015 +
23307700-23307906,23309274-23309483,23309915-23310085,
23310163-23310286,23310753-23310814,23311185-23311266,
23311870-23312009
Length = 331
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 447 TAMLGGMLSSPGGTS-LDLPISTSELEKLAKSVEEQELVRAPQPEAAIDNNVCRERLLRH 271
T M+GG+ GGT L LP+ S E A++ ++ P P AA E L
Sbjct: 67 TTMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDL 126
Query: 270 ITC 262
+ C
Sbjct: 127 VVC 129
>08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237
Length = 135
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -3
Query: 423 SSPGGTSLDL-PISTSELEKLAKSVEEQELVRAPQPEAAIDNNVCRERLLRH--ITCCQA 253
SS GG+ ++ P + S E+ A+ + + + E D++ + ITCC +
Sbjct: 40 SSGGGSPAEVAPAAKSVAEEKARRLRRRAEKDEKRSEECSDSSAYALVQFKQKVITCCTS 99
Query: 252 LLDARLDSIEAQVAELESQDPSFED 178
L A ++ + L S +P F D
Sbjct: 100 RLQAEQTQFQSSIVVLASHNPHFLD 124
>04_04_1164 - 31413577-31414080,31414435-31414647
Length = 238
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 269 MCRRSRSRHTLLSMAASGCGALTNSCSSTDFASFSNSEVLIGKSREVPP--GLESIPPSI 442
M R + R T AA+ + + SS+ AS S+S IGK PP G + P S
Sbjct: 115 MVRSALERATAGRSAAAAAARGSPATSSSSSASTSSSSSSIGKRHRSPPSGGAVATPASP 174
Query: 443 AVGAA*LSRC 472
++ AA C
Sbjct: 175 SMRAAACPSC 184
>06_01_0008 + 141405-142421
Length = 338
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 438 LGGMLSSPGGTSLDLPISTSELEKLAKSVEEQELVRAPQPEAA 310
LGG + PGG SL S LE+L + + E + R P AA
Sbjct: 135 LGGAAAGPGGISLGDYFVGSGLEQLIQQLAENDPNRYGTPPAA 177
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = -3
Query: 492 EDGDRFLQRDSQAAPTAMLGGMLSSPGGTSLDLPISTSELE-KLAKSVEEQELVRAPQPE 316
E+ + +L R Q+ P +M + + + S + KLA + E+ R PE
Sbjct: 36 EEAETWLARVDQSPPESMHKALRPTMSALIKKELLDHSVPDIKLAVASCLTEVTRITAPE 95
Query: 315 AAIDNNVCRERLLRHITCCQALLDARLDSIEAQVAELES 199
A D++V ++ R + + L D S +VA LE+
Sbjct: 96 APYDDDVMKDVFTRVVEAFEKLDDMESPSYARRVAMLET 134
>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 257 WQHVMCRRSRSRHTLLSMAASGCGALTNSCSSTDFASFSNSEVLIGK 397
+Q MCR RHTLLS+++ L ++ SS SN L+ K
Sbjct: 914 FQAAMCR---IRHTLLSLSSKASAELKSALSSLVHTDVSNKLDLVPK 957
>03_02_0856 - 11815684-11815701,11816019-11816194,11817878-11818670
Length = 328
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 275 RRSRSRHTLLSMAASGCGALTNSCSSTDFASFSNSEVLIGKSR-EVPPGLESIPPSIAVG 451
RRSRSR M A+ A + SS+ A+ S + + +PPG ++ ++A+G
Sbjct: 94 RRSRSRRRQRQMQAAAAAAAAAASSSSPSANTSPAAASAATVQVGLPPG--AVVHTMAMG 151
Query: 452 AA*LSRCRNLSPSSSPG 502
+ + S SSS G
Sbjct: 152 GSACQYEQQASSSSSSG 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,522
Number of Sequences: 37544
Number of extensions: 314931
Number of successful extensions: 1058
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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