Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    93   3e-20
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    60   2e-10
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    55   7e-09
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   3.0  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 44/85 (51%), Positives = 58/85 (68%)
 Frame = +3

Query: 6    VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQXMSFESSLLFLKDAILNSKK 185
            VYGI VDPRHL+LIADYMT+ G ++  +R G+E ++SP   MSFE++  FL +A L    
Sbjct: 1595 VYGIAVDPRHLSLIADYMTFEGGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDV 1654

Query: 186  DDLRXASXXLMVGRLXRTGTGVFDL 260
            DDL   S  L+VGR+   GTG FD+
Sbjct: 1655 DDLSNPSSRLVVGRVGNFGTGSFDI 1679


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +3

Query: 12   GITVDPRHLTLIADYMTYNGIFEPMSRKGME-ASSSPLQXMSFESSLLFLKDAILNSKKD 188
            G  V+ RHL L+ D MT  G    ++R G+  A +  L   SFE ++  L DA  + +KD
Sbjct: 1366 GSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKD 1425

Query: 189  DLRXASXXLMVGRLXRTGTGVFDL 260
            D +  S  +M+G+L   GTG FD+
Sbjct: 1426 DCKGISENIMLGQLAPMGTGAFDI 1449


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 9    YGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQXMSFESSLLFLKDAILNSKK 185
            +G+TVDPRH+ L+ D MT  G    ++R G+ +   S L   SFE +   L +A     K
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAK 1351

Query: 186  DDLRXASXXLMVGRLXRTGTGVFDL 260
            D +   S  +++G+L   GT VF L
Sbjct: 1352 DSIEGISECIVLGKLAPIGTNVFQL 1376


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 413 ADDDDINLSXMGKAKDFSPYSQAPSTDRKAR*MTRRSRLRQIN 285
           ADD+   L  + KAKD         TD+    +TR  R++Q N
Sbjct: 776 ADDEAAYLQLLDKAKDTRITHLLKQTDQYLENLTRAVRIQQSN 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,066
Number of Sequences: 5004
Number of extensions: 29581
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)