Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321F03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 75 3e-14
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 58 4e-09
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 54 5e-08
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 53 2e-07
12_02_0526 - 20032206-20033106,20034853-20035181 30 0.98
08_02_1271 - 25762750-25764276 29 2.3
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439 29 3.0
12_02_1092 - 26011445-26012071,26012826-26014022,26014083-260142... 28 5.2
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 75.4 bits (177), Expect = 3e-14
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +3
Query: 9 YGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQXMSFESSLLFLKDAILNSKK 185
YGI VD RHL LIAD+MT++G + PMSR GM + S+SP M+FE++ F+ +A + +
Sbjct: 1712 YGIHVDMRHLNLIADFMTFDGGYRPMSRLGMGQFSTSPFGKMTFETATKFIVEAASHGES 1771
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDL 260
D L S + +G+ + GTG F L
Sbjct: 1772 DTLDGPSASVCLGKPVKVGTGSFGL 1796
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 58.0 bits (134), Expect = 4e-09
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 12 GITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQXMSFESSLLFLKDAILNSKKD 188
G V+ RHL ++ D MTY G ++R G+ + + PL SFE ++ L DA + ++ D
Sbjct: 1418 GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1477
Query: 189 DLRXASXXLMVGRLXRTGTGVFDL 260
LR S +M+G+L GTG DL
Sbjct: 1478 PLRGVSENIMLGQLAPIGTGGCDL 1501
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 54.4 bits (125), Expect = 5e-08
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +3
Query: 12 GITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQXMSFESSLLFLKDAILNSKKD 188
G V+ RHL ++ D MTY G ++R G+ + + PL SFE ++ L DA + ++ D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439
Query: 189 DLRXASXXLMVGRLXRTGTG 248
LR + +M+G+L GTG
Sbjct: 1440 YLRGVTENIMLGQLAPIGTG 1459
>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +3
Query: 9 YGITVDPRHLTLIADYMTYNGIFEPMSRKGM-EASSSPLQXMSFESSLLFLKDAILNSKK 185
+G+ +D RH+ L+AD MTY G ++R G+ + SS L SFE + L +A + ++
Sbjct: 1247 HGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGRE 1306
Query: 186 DDLRXASXXLMVGRLXRTGTGVFDLQ 263
D + S +++G + GTG+ ++
Sbjct: 1307 DQIEGVSECIIMGIPMQLGTGILKVR 1332
>12_02_0526 - 20032206-20033106,20034853-20035181
Length = 409
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 401 HHHRPKVSTLTXDSLV*QXTHHSSSXL 481
HHH ++T+ SL+ HHSSS L
Sbjct: 260 HHHHHAIATMDGSSLIGDHHHHSSSIL 286
>08_02_1271 - 25762750-25764276
Length = 508
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 195 GDHLS*NSIWRPSRTKATIRMTXAVTATKTPPFPSG 88
G+H + +W P+R +A R+ V TKT SG
Sbjct: 258 GEHEFGDVVWYPARGEAVFRIDDRVATTKTNTISSG 293
>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
Length = 1093
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 328 KHGE*RGGHDLDRLTLPYKCECCRSKTPVP 239
+ GE R +R+T CE C SK P P
Sbjct: 638 RRGEERRSEMEERMTFTKNCETCASKNPAP 667
>12_02_1092 -
26011445-26012071,26012826-26014022,26014083-26014286,
26014316-26014385,26014440-26014479,26015566-26015632,
26015718-26015740,26017985-26018081,26018553-26018614,
26018913-26019297,26019924-26020007,26020383-26020467,
26020579-26020790,26020881-26021030
Length = 1100
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 331 RSVEGAWLYG-LKSFAFPIXDKLISSSSAEGVNFDX*QFSITXYA 462
R+ W Y S +FP +LISS + G+ + S+T YA
Sbjct: 656 RNCSSDWWYDDASSLSFPTYKRLISSMESRGIKQEIIAGSLTYYA 700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,729,316
Number of Sequences: 37544
Number of extensions: 215644
Number of successful extensions: 566
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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